miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 3' -49.4 NC_003521.1 + 127175 0.75 0.868912
Target:  5'- uGGCCG---GCAUGAGgCACAGGUAGa -3'
miRNA:   3'- uUUGGUcauUGUACUCgGUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 130635 0.66 0.999271
Target:  5'- -cGCCGGUGGCGcUGAGCgCGCAcGGc-- -3'
miRNA:   3'- uuUGGUCAUUGU-ACUCG-GUGU-CCauc -5'
13952 3' -49.4 NC_003521.1 + 137055 0.68 0.995549
Target:  5'- cGGGCagcGUGAcCGUGAGCCcgcugucgcGCAGGUAGg -3'
miRNA:   3'- -UUUGgu-CAUU-GUACUCGG---------UGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 137285 0.69 0.989482
Target:  5'- --cCCAGcGACcugGAGCUGCGGGUGGc -3'
miRNA:   3'- uuuGGUCaUUGua-CUCGGUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 138748 0.67 0.997704
Target:  5'- cAGCUGGUAGac-GGGCgGCAGGUGGc -3'
miRNA:   3'- uUUGGUCAUUguaCUCGgUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 145358 0.81 0.585505
Target:  5'- -cGCCAGguccAGCAggcggcUGAGCCACAGGUAGu -3'
miRNA:   3'- uuUGGUCa---UUGU------ACUCGGUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 164857 0.67 0.998886
Target:  5'- cGGCCGGUGGCGUGGcgguuacugucucGCCAgCAccGGUGGc -3'
miRNA:   3'- uUUGGUCAUUGUACU-------------CGGU-GU--CCAUC- -5'
13952 3' -49.4 NC_003521.1 + 167887 0.75 0.883804
Target:  5'- aAAGCCGGUGAauuCGUuguaGAGCgGCAGGUGGg -3'
miRNA:   3'- -UUUGGUCAUU---GUA----CUCGgUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 180912 0.68 0.996772
Target:  5'- --cCCGGUAGC--GAGCCGCGGcGUGa -3'
miRNA:   3'- uuuGGUCAUUGuaCUCGGUGUC-CAUc -5'
13952 3' -49.4 NC_003521.1 + 181248 0.69 0.993029
Target:  5'- -uACCGGUAcgacaACAUacAGCUGCAGGUGGa -3'
miRNA:   3'- uuUGGUCAU-----UGUAc-UCGGUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 195943 0.71 0.973125
Target:  5'- uAGCCGuccuGCGUGGGCCACAGGc-- -3'
miRNA:   3'- uUUGGUcau-UGUACUCGGUGUCCauc -5'
13952 3' -49.4 NC_003521.1 + 207042 0.71 0.975822
Target:  5'- --gUCGGUGGC-UGGGCCGCAGGccggAGg -3'
miRNA:   3'- uuuGGUCAUUGuACUCGGUGUCCa---UC- -5'
13952 3' -49.4 NC_003521.1 + 212030 0.68 0.997271
Target:  5'- -uGCCaAGUGGCAUGAGagggCGCGGGgcGc -3'
miRNA:   3'- uuUGG-UCAUUGUACUCg---GUGUCCauC- -5'
13952 3' -49.4 NC_003521.1 + 214600 0.74 0.916775
Target:  5'- -cACCGGU-ACGaGAGCUGCGGGUAGc -3'
miRNA:   3'- uuUGGUCAuUGUaCUCGGUGUCCAUC- -5'
13952 3' -49.4 NC_003521.1 + 215425 0.69 0.991973
Target:  5'- cGAGCCcuccGUGaaGCA-GAGCCGCGGGUGc -3'
miRNA:   3'- -UUUGGu---CAU--UGUaCUCGGUGUCCAUc -5'
13952 3' -49.4 NC_003521.1 + 219182 0.69 0.991973
Target:  5'- --uCCAGUGGCGgcUGAGCCcCAGGc-- -3'
miRNA:   3'- uuuGGUCAUUGU--ACUCGGuGUCCauc -5'
13952 3' -49.4 NC_003521.1 + 224563 0.71 0.978316
Target:  5'- gGAACCAGcGGCAgcgcAGCCGCAGGcugAGg -3'
miRNA:   3'- -UUUGGUCaUUGUac--UCGGUGUCCa--UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.