Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13952 | 3' | -49.4 | NC_003521.1 | + | 138748 | 0.67 | 0.997704 |
Target: 5'- cAGCUGGUAGac-GGGCgGCAGGUGGc -3' miRNA: 3'- uUUGGUCAUUguaCUCGgUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 77859 | 0.67 | 0.998674 |
Target: 5'- --cCCGGUGACGUGgguucGGCCACGGcGg-- -3' miRNA: 3'- uuuGGUCAUUGUAC-----UCGGUGUC-Cauc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 164857 | 0.67 | 0.998886 |
Target: 5'- cGGCCGGUGGCGUGGcgguuacugucucGCCAgCAccGGUGGc -3' miRNA: 3'- uUUGGUCAUUGUACU-------------CGGU-GU--CCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 28800 | 0.66 | 0.999105 |
Target: 5'- uGGCCAGggcgaaggccGGCAUGGGCaCGCAGGc-- -3' miRNA: 3'- uUUGGUCa---------UUGUACUCG-GUGUCCauc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 130635 | 0.66 | 0.999271 |
Target: 5'- -cGCCGGUGGCGcUGAGCgCGCAcGGc-- -3' miRNA: 3'- uuUGGUCAUUGU-ACUCG-GUGU-CCauc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 44632 | 0.66 | 0.99941 |
Target: 5'- cGGCCucgGGCGUGGGCCGCAGc--- -3' miRNA: 3'- uUUGGucaUUGUACUCGGUGUCcauc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 180912 | 0.68 | 0.996772 |
Target: 5'- --cCCGGUAGC--GAGCCGCGGcGUGa -3' miRNA: 3'- uuuGGUCAUUGuaCUCGGUGUC-CAUc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 44346 | 0.68 | 0.996201 |
Target: 5'- uGGGCCAccGGCuUGAcCCGCAGGUAGg -3' miRNA: 3'- -UUUGGUcaUUGuACUcGGUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 137055 | 0.68 | 0.995549 |
Target: 5'- cGGGCagcGUGAcCGUGAGCCcgcugucgcGCAGGUAGg -3' miRNA: 3'- -UUUGgu-CAUU-GUACUCGG---------UGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 73151 | 0.68 | 0.994809 |
Target: 5'- cAGCCcguGUAGCGUGAGCCuGC-GGUGa -3' miRNA: 3'- uUUGGu--CAUUGUACUCGG-UGuCCAUc -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 181248 | 0.69 | 0.993029 |
Target: 5'- -uACCGGUAcgacaACAUacAGCUGCAGGUGGa -3' miRNA: 3'- uuUGGUCAU-----UGUAc-UCGGUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 105796 | 0.71 | 0.978316 |
Target: 5'- aGGACaCGGgcgcGACAUgGAGCCACAGGaAGa -3' miRNA: 3'- -UUUG-GUCa---UUGUA-CUCGGUGUCCaUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 45386 | 0.71 | 0.973125 |
Target: 5'- -uGCCGGUGcacgaACAUacGGcGCCGCAGGUAGc -3' miRNA: 3'- uuUGGUCAU-----UGUA--CU-CGGUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 44143 | 0.72 | 0.963736 |
Target: 5'- -cACCGGUAGCGUGGGCgACGGcccgGGa -3' miRNA: 3'- uuUGGUCAUUGUACUCGgUGUCca--UC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 145358 | 0.81 | 0.585505 |
Target: 5'- -cGCCAGguccAGCAggcggcUGAGCCACAGGUAGu -3' miRNA: 3'- uuUGGUCa---UUGU------ACUCGGUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 20223 | 1.08 | 0.01833 |
Target: 5'- aAAACCAGUAACAUGAGCCACAGGUAGg -3' miRNA: 3'- -UUUGGUCAUUGUACUCGGUGUCCAUC- -5' |
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13952 | 3' | -49.4 | NC_003521.1 | + | 11967 | 0.66 | 0.999525 |
Target: 5'- gAGGCCGGacgaggaAUGAGCCGguGGUGc -3' miRNA: 3'- -UUUGGUCauug---UACUCGGUguCCAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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