miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 100437 0.68 0.680313
Target:  5'- ---aGCgGCGGCGcUCgggagCAGGGCCGCCGa -3'
miRNA:   3'- aagaCGaCGCCGC-AG-----GUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 169705 0.68 0.660779
Target:  5'- aUCUGCauagucGUGGCGUUCAGGugCGuCCc -3'
miRNA:   3'- aAGACGa-----CGCCGCAGGUCCugGU-GGu -5'
13952 5' -60.2 NC_003521.1 + 131222 0.68 0.660779
Target:  5'- ---cGUgacggGCGGCGg-CGGGGCCACCAg -3'
miRNA:   3'- aagaCGa----CGCCGCagGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 62313 0.69 0.650975
Target:  5'- cUUCaugGUUGCGGCGUCCgcGGGACgGgCGa -3'
miRNA:   3'- -AAGa--CGACGCCGCAGG--UCCUGgUgGU- -5'
13952 5' -60.2 NC_003521.1 + 218030 0.69 0.641159
Target:  5'- gUUCUuggGCggcgGCGGCGUCCgcagguagaugAGGuCCACCGu -3'
miRNA:   3'- -AAGA---CGa---CGCCGCAGG-----------UCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 119768 0.69 0.641159
Target:  5'- aUCUGCU-CGGCcUCCAGGcugcgguCCACCu -3'
miRNA:   3'- aAGACGAcGCCGcAGGUCCu------GGUGGu -5'
13952 5' -60.2 NC_003521.1 + 227220 0.69 0.641159
Target:  5'- cUCUGCggGCGGCGccgCCAuGGAuuUCGCCGg -3'
miRNA:   3'- aAGACGa-CGCCGCa--GGU-CCU--GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 102704 0.69 0.640177
Target:  5'- aUCUGCcgcggccUGCGGCGcgUCuGGAUCGCCGu -3'
miRNA:   3'- aAGACG-------ACGCCGCa-GGuCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 71169 0.69 0.631335
Target:  5'- cUCUGCcucuuCGGCGUCCuccAGGuCCACCu -3'
miRNA:   3'- aAGACGac---GCCGCAGG---UCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 53396 0.69 0.630353
Target:  5'- cUUCUGCagcuccuUGCgGGCGUCgGGcGCCACCGa -3'
miRNA:   3'- -AAGACG-------ACG-CCGCAGgUCcUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 39038 0.69 0.621512
Target:  5'- -aUUGCUG-GGCGUCUGGGugC-CCAg -3'
miRNA:   3'- aaGACGACgCCGCAGGUCCugGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 144098 0.69 0.621512
Target:  5'- cUUCUGCcucaUGCGGC-UgCuGGACCGCCGc -3'
miRNA:   3'- -AAGACG----ACGCCGcAgGuCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 29476 0.69 0.615622
Target:  5'- -gCUGCUGCGggaccccaaccacucGCGcCCgcGGGACCGCCu -3'
miRNA:   3'- aaGACGACGC---------------CGCaGG--UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 142774 0.69 0.611697
Target:  5'- gUCcGCgGCGGCGUCguCGGuGCCACCAa -3'
miRNA:   3'- aAGaCGaCGCCGCAG--GUCcUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 118936 0.69 0.601896
Target:  5'- ---gGCgGCGGCGUCCcgucAGGGCCAgCGc -3'
miRNA:   3'- aagaCGaCGCCGCAGG----UCCUGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 144766 0.69 0.601896
Target:  5'- aUCUGCcgacaGuCGGCGUCCAGGuCCuCCu -3'
miRNA:   3'- aAGACGa----C-GCCGCAGGUCCuGGuGGu -5'
13952 5' -60.2 NC_003521.1 + 151327 0.7 0.543734
Target:  5'- ---gGCggGUGGCGUCCgAGGGCCugCGc -3'
miRNA:   3'- aagaCGa-CGCCGCAGG-UCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 127279 0.71 0.524728
Target:  5'- ---cGCgGCGGCGUCguCGGGcACCGCCAc -3'
miRNA:   3'- aagaCGaCGCCGCAG--GUCC-UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 117503 0.71 0.51532
Target:  5'- ---gGCgGCGGCG-CCGGGAgCCGCCGc -3'
miRNA:   3'- aagaCGaCGCCGCaGGUCCU-GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 57275 0.71 0.505981
Target:  5'- aUCcGCgugGCGGCGUCCGuGACCGCg- -3'
miRNA:   3'- aAGaCGa--CGCCGCAGGUcCUGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.