miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13953 3' -48.2 NC_003521.1 + 197132 0.66 0.999973
Target:  5'- cCCGcGGUGCCGuugcUGGAGGugGa---- -3'
miRNA:   3'- -GGCaCUACGGCu---ACUUCCugUaaaga -5'
13953 3' -48.2 NC_003521.1 + 225246 0.66 0.999973
Target:  5'- gCGUGGUGCUGGUGGGcGACcg--CUa -3'
miRNA:   3'- gGCACUACGGCUACUUcCUGuaaaGA- -5'
13953 3' -48.2 NC_003521.1 + 211623 0.66 0.999964
Target:  5'- aCGUGAUGUUcGUGAAGu-CGUUUCa -3'
miRNA:   3'- gGCACUACGGcUACUUCcuGUAAAGa -5'
13953 3' -48.2 NC_003521.1 + 111614 0.66 0.999936
Target:  5'- gCCGgGAU-CCGAggaGAAGGACAUggCg -3'
miRNA:   3'- -GGCaCUAcGGCUa--CUUCCUGUAaaGa -5'
13953 3' -48.2 NC_003521.1 + 175411 0.66 0.999936
Target:  5'- gUGUGAUGagaaccCCGG-GAAGGACAU-UCUg -3'
miRNA:   3'- gGCACUAC------GGCUaCUUCCUGUAaAGA- -5'
13953 3' -48.2 NC_003521.1 + 30340 0.66 0.999936
Target:  5'- aCCGUGAgcgGCCGgcG-GGGACGg---- -3'
miRNA:   3'- -GGCACUa--CGGCuaCuUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 148940 0.66 0.999936
Target:  5'- gCCGUGcuggcgcguGUGCUGcUGGAGGGCAg---- -3'
miRNA:   3'- -GGCAC---------UACGGCuACUUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 29385 0.66 0.999936
Target:  5'- aCCGcGAgGCCGA-GGAGGACGa---- -3'
miRNA:   3'- -GGCaCUaCGGCUaCUUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 85478 0.67 0.999925
Target:  5'- gUCGUGGUGCCGGUGcccgcgcccccgccGGGACccgcggUCg -3'
miRNA:   3'- -GGCACUACGGCUACu-------------UCCUGuaa---AGa -5'
13953 3' -48.2 NC_003521.1 + 87363 0.67 0.999916
Target:  5'- cCCGagGAggagGCCGAggUGGAGGACGa---- -3'
miRNA:   3'- -GGCa-CUa---CGGCU--ACUUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 191082 0.67 0.999891
Target:  5'- aCCGUGGUGgCGgcGgcGGGCugcgUCUc -3'
miRNA:   3'- -GGCACUACgGCuaCuuCCUGuaa-AGA- -5'
13953 3' -48.2 NC_003521.1 + 45739 0.67 0.999891
Target:  5'- gCCGUGGUgguggGCCgGGUGAAGGugAc---- -3'
miRNA:   3'- -GGCACUA-----CGG-CUACUUCCugUaaaga -5'
13953 3' -48.2 NC_003521.1 + 155721 0.67 0.99986
Target:  5'- gCCGcUGccgccGCCGAUGggGGA-GUUUCg -3'
miRNA:   3'- -GGC-ACua---CGGCUACuuCCUgUAAAGa -5'
13953 3' -48.2 NC_003521.1 + 119401 0.67 0.99986
Target:  5'- gCCGUGAUGCgCGGUGAGGuauccgaguuccGACcccagUCg -3'
miRNA:   3'- -GGCACUACG-GCUACUUC------------CUGuaa--AGa -5'
13953 3' -48.2 NC_003521.1 + 127177 0.67 0.999821
Target:  5'- gCUGcUGAgcgaGCUGGUGGAGGACA--UCg -3'
miRNA:   3'- -GGC-ACUa---CGGCUACUUCCUGUaaAGa -5'
13953 3' -48.2 NC_003521.1 + 112743 0.68 0.999638
Target:  5'- gCGUGAUGCCGAaGuAGGugGc---- -3'
miRNA:   3'- gGCACUACGGCUaCuUCCugUaaaga -5'
13953 3' -48.2 NC_003521.1 + 37479 0.69 0.998749
Target:  5'- aCCGUGGUGCCGc---AGGGCAc---- -3'
miRNA:   3'- -GGCACUACGGCuacuUCCUGUaaaga -5'
13953 3' -48.2 NC_003521.1 + 172552 0.7 0.997843
Target:  5'- cCUGgugGAUGCUGGggauguUGAAGGGCAggUUCUu -3'
miRNA:   3'- -GGCa--CUACGGCU------ACUUCCUGUa-AAGA- -5'
13953 3' -48.2 NC_003521.1 + 62605 0.7 0.997843
Target:  5'- aCCGUGcUGCCGA---AGGACGagUCg -3'
miRNA:   3'- -GGCACuACGGCUacuUCCUGUaaAGa -5'
13953 3' -48.2 NC_003521.1 + 152481 0.7 0.996975
Target:  5'- gCGUGAUGgacuucaCGGUGAAGGACGa---- -3'
miRNA:   3'- gGCACUACg------GCUACUUCCUGUaaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.