Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13953 | 3' | -48.2 | NC_003521.1 | + | 112743 | 0.68 | 0.999638 |
Target: 5'- gCGUGAUGCCGAaGuAGGugGc---- -3' miRNA: 3'- gGCACUACGGCUaCuUCCugUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 62605 | 0.7 | 0.997843 |
Target: 5'- aCCGUGcUGCCGA---AGGACGagUCg -3' miRNA: 3'- -GGCACuACGGCUacuUCCUGUaaAGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 152481 | 0.7 | 0.996975 |
Target: 5'- gCGUGAUGgacuucaCGGUGAAGGACGa---- -3' miRNA: 3'- gGCACUACg------GCUACUUCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 154800 | 0.71 | 0.993492 |
Target: 5'- aCCGUGGUGCCGGUGAucacGCAg---- -3' miRNA: 3'- -GGCACUACGGCUACUucc-UGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 85845 | 0.76 | 0.927481 |
Target: 5'- uCCGUGGUGgUGGUGggGGGCGg---- -3' miRNA: 3'- -GGCACUACgGCUACuuCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 89277 | 0.82 | 0.674196 |
Target: 5'- gCCGUGgcGCCGGUGggGcccgcGGCAUUUCUg -3' miRNA: 3'- -GGCACuaCGGCUACuuC-----CUGUAAAGA- -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 23873 | 1.12 | 0.019314 |
Target: 5'- cCCGUGAUGCCGAUGAAGGACAUUUCUg -3' miRNA: 3'- -GGCACUACGGCUACUUCCUGUAAAGA- -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 197132 | 0.66 | 0.999973 |
Target: 5'- cCCGcGGUGCCGuugcUGGAGGugGa---- -3' miRNA: 3'- -GGCaCUACGGCu---ACUUCCugUaaaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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