miRNA display CGI

Results 21 - 28 of 28 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
13953	3'	-48.2	NC_003521.1	+	111614	0.66	0.999936
	Target:  5'- gCCGgGAU-CCGAggaGAAGGACAUggCg -3' miRNA:   3'- -GGCaCUAcGGCUa--CUUCCUGUAaaGa -5'
13953	3'	-48.2	NC_003521.1	+	30340	0.66	0.999936
	Target:  5'- aCCGUGAgcgGCCGgcG-GGGACGg---- -3' miRNA:   3'- -GGCACUa--CGGCuaCuUCCUGUaaaga -5'
13953	3'	-48.2	NC_003521.1	+	175411	0.66	0.999936
	Target:  5'- gUGUGAUGagaaccCCGG-GAAGGACAU-UCUg -3' miRNA:   3'- gGCACUAC------GGCUaCUUCCUGUAaAGA- -5'
13953	3'	-48.2	NC_003521.1	+	148940	0.66	0.999936
	Target:  5'- gCCGUGcuggcgcguGUGCUGcUGGAGGGCAg---- -3' miRNA:   3'- -GGCAC---------UACGGCuACUUCCUGUaaaga -5'
13953	3'	-48.2	NC_003521.1	+	29385	0.66	0.999936
	Target:  5'- aCCGcGAgGCCGA-GGAGGACGa---- -3' miRNA:   3'- -GGCaCUaCGGCUaCUUCCUGUaaaga -5'
13953	3'	-48.2	NC_003521.1	+	211623	0.66	0.999964
	Target:  5'- aCGUGAUGUUcGUGAAGu-CGUUUCa -3' miRNA:   3'- gGCACUACGGcUACUUCcuGUAAAGa -5'
13953	3'	-48.2	NC_003521.1	+	225246	0.66	0.999973
	Target:  5'- gCGUGGUGCUGGUGGGcGACcg--CUa -3' miRNA:   3'- gGCACUACGGCUACUUcCUGuaaaGA- -5'
13953	3'	-48.2	NC_003521.1	+	197132	0.66	0.999973
	Target:  5'- cCCGcGGUGCCGuugcUGGAGGugGa---- -3' miRNA:   3'- -GGCaCUACGGCu---ACUUCCugUaaaga -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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