Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13953 | 3' | -48.2 | NC_003521.1 | + | 155721 | 0.67 | 0.99986 |
Target: 5'- gCCGcUGccgccGCCGAUGggGGA-GUUUCg -3' miRNA: 3'- -GGC-ACua---CGGCUACuuCCUgUAAAGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 170190 | 0.72 | 0.988838 |
Target: 5'- gCgGUGGUGCCGGUGGAGGuagugGCAc---- -3' miRNA: 3'- -GgCACUACGGCUACUUCC-----UGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 172552 | 0.7 | 0.997843 |
Target: 5'- cCUGgugGAUGCUGGggauguUGAAGGGCAggUUCUu -3' miRNA: 3'- -GGCa--CUACGGCU------ACUUCCUGUa-AAGA- -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 175411 | 0.66 | 0.999936 |
Target: 5'- gUGUGAUGagaaccCCGG-GAAGGACAU-UCUg -3' miRNA: 3'- gGCACUAC------GGCUaCUUCCUGUAaAGA- -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 191082 | 0.67 | 0.999891 |
Target: 5'- aCCGUGGUGgCGgcGgcGGGCugcgUCUc -3' miRNA: 3'- -GGCACUACgGCuaCuuCCUGuaa-AGA- -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 197132 | 0.66 | 0.999973 |
Target: 5'- cCCGcGGUGCCGuugcUGGAGGugGa---- -3' miRNA: 3'- -GGCaCUACGGCu---ACUUCCugUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 211623 | 0.66 | 0.999964 |
Target: 5'- aCGUGAUGUUcGUGAAGu-CGUUUCa -3' miRNA: 3'- gGCACUACGGcUACUUCcuGUAAAGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 225246 | 0.66 | 0.999973 |
Target: 5'- gCGUGGUGCUGGUGGGcGACcg--CUa -3' miRNA: 3'- gGCACUACGGCUACUUcCUGuaaaGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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