Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13953 | 3' | -48.2 | NC_003521.1 | + | 85478 | 0.67 | 0.999925 |
Target: 5'- gUCGUGGUGCCGGUGcccgcgcccccgccGGGACccgcggUCg -3' miRNA: 3'- -GGCACUACGGCUACu-------------UCCUGuaa---AGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 62605 | 0.7 | 0.997843 |
Target: 5'- aCCGUGcUGCCGA---AGGACGagUCg -3' miRNA: 3'- -GGCACuACGGCUacuUCCUGUaaAGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 45739 | 0.67 | 0.999891 |
Target: 5'- gCCGUGGUgguggGCCgGGUGAAGGugAc---- -3' miRNA: 3'- -GGCACUA-----CGG-CUACUUCCugUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 38741 | 0.79 | 0.820109 |
Target: 5'- gCGUGcUGCCGAUGGAGGAUuuaUUCg -3' miRNA: 3'- gGCACuACGGCUACUUCCUGua-AAGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 37479 | 0.69 | 0.998749 |
Target: 5'- aCCGUGGUGCCGc---AGGGCAc---- -3' miRNA: 3'- -GGCACUACGGCuacuUCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 30340 | 0.66 | 0.999936 |
Target: 5'- aCCGUGAgcgGCCGgcG-GGGACGg---- -3' miRNA: 3'- -GGCACUa--CGGCuaCuUCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 29385 | 0.66 | 0.999936 |
Target: 5'- aCCGcGAgGCCGA-GGAGGACGa---- -3' miRNA: 3'- -GGCaCUaCGGCUaCUUCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 23873 | 1.12 | 0.019314 |
Target: 5'- cCCGUGAUGCCGAUGAAGGACAUUUCUg -3' miRNA: 3'- -GGCACUACGGCUACUUCCUGUAAAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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