miRNA display CGI


Results 21 - 40 of 258 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 239143 0.66 0.997528
Target:  5'- aGGACGcGGAAaCGGacCCGcgGGACa -3'
miRNA:   3'- -CCUGCuCCUUcGCUauGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 103117 0.66 0.997528
Target:  5'- aGGACGcGG-GGUGAgGCUGGUGGggagaGCCc -3'
miRNA:   3'- -CCUGCuCCuUCGCUaUGGCUACC-----UGG- -5'
13954 5' -52.2 NC_003521.1 + 66756 0.66 0.997528
Target:  5'- uGGACGAcaucccGcGGGUGAUGCCGccGGcCCa -3'
miRNA:   3'- -CCUGCU------CcUUCGCUAUGGCuaCCuGG- -5'
13954 5' -52.2 NC_003521.1 + 202172 0.66 0.997528
Target:  5'- aGGACGcGGAAaCGGacCCGcgGGACa -3'
miRNA:   3'- -CCUGCuCCUUcGCUauGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 60292 0.66 0.997096
Target:  5'- uGACGGGGAAgGUGAgGCCGGUGc--- -3'
miRNA:   3'- cCUGCUCCUU-CGCUaUGGCUACcugg -5'
13954 5' -52.2 NC_003521.1 + 45678 0.66 0.997096
Target:  5'- aGGcCGAGGAGGUGGaggccacgGCCGAcgaagagGcGGCCg -3'
miRNA:   3'- -CCuGCUCCUUCGCUa-------UGGCUa------C-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 197472 0.66 0.997096
Target:  5'- aGACGGGGAAGgaaGAagucCCGcgcugGGACCg -3'
miRNA:   3'- cCUGCUCCUUCg--CUau--GGCua---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 133218 0.66 0.997096
Target:  5'- gGGGCGcGGGuucaggGGCGAUGgCGGUcgaGGACg -3'
miRNA:   3'- -CCUGCuCCU------UCGCUAUgGCUA---CCUGg -5'
13954 5' -52.2 NC_003521.1 + 206566 0.66 0.997096
Target:  5'- aGGACGAuaGGGCGAcgggGCCGAcaGGCCc -3'
miRNA:   3'- -CCUGCUccUUCGCUa---UGGCUacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 228351 0.66 0.997096
Target:  5'- uGGACGAGGuuuccGGCGccucggACgUGAgcugGGACCc -3'
miRNA:   3'- -CCUGCUCCu----UCGCua----UG-GCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 81610 0.66 0.996807
Target:  5'- uGGACGAGGugAAGUGAagggagucgugggucUcggcGCgGAUGGugCg -3'
miRNA:   3'- -CCUGCUCC--UUCGCU---------------A----UGgCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 42307 0.66 0.996655
Target:  5'- uGGGCGAGGuggguagcagcugcGUGGUGCCGgcGGcgucugucguGCCg -3'
miRNA:   3'- -CCUGCUCCuu------------CGCUAUGGCuaCC----------UGG- -5'
13954 5' -52.2 NC_003521.1 + 84117 0.66 0.996603
Target:  5'- aGGACgGAGGAGGaGGagUCGAUGGAg- -3'
miRNA:   3'- -CCUG-CUCCUUCgCUauGGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 166902 0.66 0.996603
Target:  5'- -cGCGGGGuAGGUGAacUGCCGcagGUGGAgCa -3'
miRNA:   3'- ccUGCUCC-UUCGCU--AUGGC---UACCUgG- -5'
13954 5' -52.2 NC_003521.1 + 138708 0.66 0.996603
Target:  5'- uGGGCGGcacGGgcGCug-GCUGGUGGugCg -3'
miRNA:   3'- -CCUGCU---CCuuCGcuaUGGCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 148410 0.66 0.996603
Target:  5'- -uGCGAGGGAGCcauGGUGCgGgcGG-CCg -3'
miRNA:   3'- ccUGCUCCUUCG---CUAUGgCuaCCuGG- -5'
13954 5' -52.2 NC_003521.1 + 11984 0.66 0.996603
Target:  5'- gGGGgGAGGGAGCuGUAUCuGUGuACCg -3'
miRNA:   3'- -CCUgCUCCUUCGcUAUGGcUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 211102 0.66 0.996603
Target:  5'- uGGACgGAGGGAGgGGa--CGAgcgccacGGACCg -3'
miRNA:   3'- -CCUG-CUCCUUCgCUaugGCUa------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 68639 0.66 0.996603
Target:  5'- cGACGAGGAgaGGgGAggcaggGCCGGcagcGGugCg -3'
miRNA:   3'- cCUGCUCCU--UCgCUa-----UGGCUa---CCugG- -5'
13954 5' -52.2 NC_003521.1 + 216298 0.66 0.99655
Target:  5'- cGGACGAcguuggcGGggGUGAUGUCGGgaaaGaGGCCg -3'
miRNA:   3'- -CCUGCU-------CCuuCGCUAUGGCUa---C-CUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.