miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 151365 0.66 0.99655
Target:  5'- gGGugGAagacgugggcacGGggGCGGUgacggcaGCCGgcGcGGCCg -3'
miRNA:   3'- -CCugCU------------CCuuCGCUA-------UGGCuaC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 200336 0.67 0.996043
Target:  5'- uGGCGAGGccaagccGGCGGUaagccaGCCGGUGaGGCa -3'
miRNA:   3'- cCUGCUCCu------UCGCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 100839 0.67 0.996043
Target:  5'- gGGACGcAGGGucGGUGAgaggcuCCGGccgGGACUg -3'
miRNA:   3'- -CCUGC-UCCU--UCGCUau----GGCUa--CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 132078 0.67 0.996043
Target:  5'- cGGcCGGGaGAAGCGGcucUACC--UGGAUCg -3'
miRNA:   3'- -CCuGCUC-CUUCGCU---AUGGcuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 60870 0.67 0.996043
Target:  5'- cGGCGuu--GGUGGUGCCGcgcguGUGGGCCu -3'
miRNA:   3'- cCUGCuccuUCGCUAUGGC-----UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 430 0.67 0.996043
Target:  5'- uGGCGAGGccaagccGGCGGUaagccaGCCGGUGaGGCa -3'
miRNA:   3'- cCUGCUCCu------UCGCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 34086 0.67 0.996043
Target:  5'- -uGCaGGGAGGUGuggUCGAUGGGCCc -3'
miRNA:   3'- ccUGcUCCUUCGCuauGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 120570 0.67 0.996043
Target:  5'- uGGGUGucGAGGCGAUGCaCGgcGcGGCCg -3'
miRNA:   3'- -CCUGCucCUUCGCUAUG-GCuaC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 113569 0.67 0.996043
Target:  5'- cGAgGAGGAcGCGGUGggGcUGGGCCu -3'
miRNA:   3'- cCUgCUCCUuCGCUAUggCuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 143142 0.67 0.995922
Target:  5'- cGGCGAGGGAGUGGgcguccucgaCGAUcccgugggggucGGACCc -3'
miRNA:   3'- cCUGCUCCUUCGCUaug-------GCUA------------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 92457 0.67 0.995409
Target:  5'- gGGGCGGGGGAGgGGagGCCa--GGGCa -3'
miRNA:   3'- -CCUGCUCCUUCgCUa-UGGcuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 147604 0.67 0.995409
Target:  5'- cGGACGAGGA--CGAagaguCCGA-GGGCg -3'
miRNA:   3'- -CCUGCUCCUucGCUau---GGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 68069 0.67 0.995409
Target:  5'- cGGAUGcuuuGGAGcacGCGcucGCCGGUGGGCa -3'
miRNA:   3'- -CCUGCu---CCUU---CGCua-UGGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 177129 0.67 0.995409
Target:  5'- uGGGCGGGGAacggauaugAGCcauagaauGUACUGccaaGUGGGCCa -3'
miRNA:   3'- -CCUGCUCCU---------UCGc-------UAUGGC----UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 42579 0.67 0.995409
Target:  5'- -aGCGGGGGAGCGggGCCaaaaacaggggGAUGcGuACCg -3'
miRNA:   3'- ccUGCUCCUUCGCuaUGG-----------CUAC-C-UGG- -5'
13954 5' -52.2 NC_003521.1 + 58030 0.67 0.995409
Target:  5'- cGACGAGGgcGCGcgcguguUGCUGcUGGcgGCCa -3'
miRNA:   3'- cCUGCUCCuuCGCu------AUGGCuACC--UGG- -5'
13954 5' -52.2 NC_003521.1 + 215421 0.67 0.995409
Target:  5'- uGGGCGAGcccuccguGAAGCaGA-GCCGcgGGugCu -3'
miRNA:   3'- -CCUGCUC--------CUUCG-CUaUGGCuaCCugG- -5'
13954 5' -52.2 NC_003521.1 + 110223 0.67 0.995342
Target:  5'- cGGGCucuuuGAGGuAGgGGUGCCGGUgcaggugGGACUu -3'
miRNA:   3'- -CCUG-----CUCCuUCgCUAUGGCUA-------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 129889 0.67 0.994696
Target:  5'- gGGAgGAGGAGGaCGAcgaCGggGcGGCCg -3'
miRNA:   3'- -CCUgCUCCUUC-GCUaugGCuaC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 134084 0.67 0.994696
Target:  5'- uGGACGcGGAGGUGuccauccaggACCuGGUGG-CCg -3'
miRNA:   3'- -CCUGCuCCUUCGCua--------UGG-CUACCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.