miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 35568 0.68 0.650217
Target:  5'- gCCUgGUCUCUGCGaucuccuaaCCGCCcugGCACAGCg -3'
miRNA:   3'- -GGA-CAGGGGCGCc--------GGCGGa--CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 40481 0.7 0.554947
Target:  5'- -aUGUgUCCGCGGCgCGCCacgGCGCcGCa -3'
miRNA:   3'- ggACAgGGGCGCCG-GCGGa--CGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 42787 0.66 0.788301
Target:  5'- aCCUGcccgugcagCCCgGCGGCUGCacgcGcCGCAACg -3'
miRNA:   3'- -GGACa--------GGGgCGCCGGCGga--C-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 42944 0.66 0.779679
Target:  5'- -----aUCCGCuGCCGCCUGCAgccCAGCg -3'
miRNA:   3'- ggacagGGGCGcCGGCGGACGU---GUUG- -5'
13956 5' -61.4 NC_003521.1 + 44103 0.67 0.741378
Target:  5'- gCCUGUgacgggCCCGCGGCCgGCggcggcugacccggCUGCuGCGACa -3'
miRNA:   3'- -GGACAg-----GGGCGCCGG-CG--------------GACG-UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 45907 0.71 0.512345
Target:  5'- gCCgGaCCCCGCggagccggcggcgguGGCCGUCUGCGuCGGCg -3'
miRNA:   3'- -GGaCaGGGGCG---------------CCGGCGGACGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 50282 0.66 0.779679
Target:  5'- gCCggGUCCgCCGCuGCUGCCgccGCACcuCg -3'
miRNA:   3'- -GGa-CAGG-GGCGcCGGCGGa--CGUGuuG- -5'
13956 5' -61.4 NC_003521.1 + 53634 0.68 0.678841
Target:  5'- -aUGUCCCCGaugcaggcgGGCCGUCUccGCACGuuGCu -3'
miRNA:   3'- ggACAGGGGCg--------CCGGCGGA--CGUGU--UG- -5'
13956 5' -61.4 NC_003521.1 + 54036 0.66 0.788301
Target:  5'- uCUUGcCCCCGCcGCCGCCacCACcGCc -3'
miRNA:   3'- -GGACaGGGGCGcCGGCGGacGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 56250 0.66 0.805168
Target:  5'- gCCgugGaCCggCUGCGGCC-CCUGCACAucgGCg -3'
miRNA:   3'- -GGa--CaGG--GGCGCCGGcGGACGUGU---UG- -5'
13956 5' -61.4 NC_003521.1 + 56294 0.69 0.602345
Target:  5'- gCCUGgacgCCCUgGUGGCCGCCU-C-CGACu -3'
miRNA:   3'- -GGACa---GGGG-CGCCGGCGGAcGuGUUG- -5'
13956 5' -61.4 NC_003521.1 + 57262 0.71 0.527023
Target:  5'- --cGUCCgugaCCGCGGCCaucgaggagaGCCUGCACucGCg -3'
miRNA:   3'- ggaCAGG----GGCGCCGG----------CGGACGUGu-UG- -5'
13956 5' -61.4 NC_003521.1 + 57630 0.66 0.762096
Target:  5'- cCCUGgcgcgUCaCgGCGGCgGUCUGgGCAGCu -3'
miRNA:   3'- -GGACa----GG-GgCGCCGgCGGACgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 58328 0.68 0.666463
Target:  5'- gCUG-CCCUcuucgccguaucggGUGGCCGCCaGCAgCAACa -3'
miRNA:   3'- gGACaGGGG--------------CGCCGGCGGaCGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 59070 0.7 0.561527
Target:  5'- gUUGUCCUcgucggccggaucgCGCGGCCGCUUGgC-CAGCg -3'
miRNA:   3'- gGACAGGG--------------GCGCCGGCGGAC-GuGUUG- -5'
13956 5' -61.4 NC_003521.1 + 59436 0.69 0.592804
Target:  5'- uCCUGacUgCCCGCGG-CGCCgUGcCGCAGCu -3'
miRNA:   3'- -GGAC--AgGGGCGCCgGCGG-AC-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 60950 0.76 0.283883
Target:  5'- cCCggGUCCCCcgcGCGGCCGCa-GCACGAa -3'
miRNA:   3'- -GGa-CAGGGG---CGCCGGCGgaCGUGUUg -5'
13956 5' -61.4 NC_003521.1 + 61356 0.66 0.805168
Target:  5'- aCCUG-CCCa-CGGCCcgcuuCCUGCAaCAGCu -3'
miRNA:   3'- -GGACaGGGgcGCCGGc----GGACGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 61986 0.76 0.283883
Target:  5'- uCCUGUaccagUCCCGCGGCUuCCgucagGCACAGCg -3'
miRNA:   3'- -GGACA-----GGGGCGCCGGcGGa----CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 63613 0.67 0.747735
Target:  5'- gCUGUCCgacCUGCaGcGCCGCCUggagaaguaccgcacGCGCAACc -3'
miRNA:   3'- gGACAGG---GGCG-C-CGGCGGA---------------CGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.