miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 217467 0.73 0.381738
Target:  5'- aUCUGcaCCgCCGUGGCCuGCCUGgGCGGCa -3'
miRNA:   3'- -GGACa-GG-GGCGCCGG-CGGACgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 213612 0.66 0.762096
Target:  5'- gCUGUUggggUgGCGGUCGCC-GCGCAGCa -3'
miRNA:   3'- gGACAGg---GgCGCCGGCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 211178 0.67 0.707162
Target:  5'- aCCgacgaCCCGUGGCCGUCaagggccugGCACGGCc -3'
miRNA:   3'- -GGacag-GGGCGCCGGCGGa--------CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 210004 0.67 0.753148
Target:  5'- uCCgGcUgCCGUGGCUGCCgcugcGCACGACc -3'
miRNA:   3'- -GGaCaGgGGCGCCGGCGGa----CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 206880 0.66 0.788301
Target:  5'- gCUGcUCgCCGC-GCaCGCC-GCACAGCa -3'
miRNA:   3'- gGAC-AGgGGCGcCG-GCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 204424 0.67 0.725776
Target:  5'- uCCacgCCCCGCGcuGCCGCCagcaGCACGGa -3'
miRNA:   3'- -GGacaGGGGCGC--CGGCGGa---CGUGUUg -5'
13956 5' -61.4 NC_003521.1 + 204360 0.69 0.592804
Target:  5'- uCCgGUCCUucguCGCGGCCcaggaGCgaGCGCAACu -3'
miRNA:   3'- -GGaCAGGG----GCGCCGG-----CGgaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 202579 0.69 0.589946
Target:  5'- cCCUGggccgcgucucgCCCCGCccgccgaGGCCGCCcUGCGCc-- -3'
miRNA:   3'- -GGACa-----------GGGGCG-------CCGGCGG-ACGUGuug -5'
13956 5' -61.4 NC_003521.1 + 202365 0.68 0.697767
Target:  5'- --cGUCCCa-CGGCCGCCgaccUGCuccaGCAGCa -3'
miRNA:   3'- ggaCAGGGgcGCCGGCGG----ACG----UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 201609 0.66 0.779679
Target:  5'- gCUGUCCCCGagcCCGCgCUGCuGCGGa -3'
miRNA:   3'- gGACAGGGGCgccGGCG-GACG-UGUUg -5'
13956 5' -61.4 NC_003521.1 + 201215 0.66 0.762096
Target:  5'- gUCUGcUCCCGCugGGCCGgCC-GUACGGCu -3'
miRNA:   3'- -GGACaGGGGCG--CCGGC-GGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 200606 0.68 0.669324
Target:  5'- aCCaGUCCCCGCGacgacCCGCCgGCcCGAa -3'
miRNA:   3'- -GGaCAGGGGCGCc----GGCGGaCGuGUUg -5'
13956 5' -61.4 NC_003521.1 + 200290 0.68 0.65978
Target:  5'- aCCgGUUUCCGCGGCgGCgUGCgGCGGg -3'
miRNA:   3'- -GGaCAGGGGCGCCGgCGgACG-UGUUg -5'
13956 5' -61.4 NC_003521.1 + 197257 0.76 0.265092
Target:  5'- cCCcGUCCCCccagucaGCGGCCGCCucUGuCGCGGCg -3'
miRNA:   3'- -GGaCAGGGG-------CGCCGGCGG--AC-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 196434 0.7 0.572856
Target:  5'- gCUGUCgCCCGggucggcCGGCUGCC-GCGCGAa -3'
miRNA:   3'- gGACAG-GGGC-------GCCGGCGGaCGUGUUg -5'
13956 5' -61.4 NC_003521.1 + 196306 0.68 0.678841
Target:  5'- uCCgauUCCCCuGC-GCCGCCUG-ACGACg -3'
miRNA:   3'- -GGac-AGGGG-CGcCGGCGGACgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 193247 0.68 0.650217
Target:  5'- gCCUGggguaCCCCGgauaCGGUCGgCUGCGgAGCg -3'
miRNA:   3'- -GGACa----GGGGC----GCCGGCgGACGUgUUG- -5'
13956 5' -61.4 NC_003521.1 + 193193 0.67 0.753148
Target:  5'- gCCagagCCgCCGUcacGGCCGCCUGgACGAUg -3'
miRNA:   3'- -GGaca-GG-GGCG---CCGGCGGACgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 191932 0.69 0.63106
Target:  5'- --gGUCCCCGgGGCC--CUGgGCAGCg -3'
miRNA:   3'- ggaCAGGGGCgCCGGcgGACgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 191529 0.67 0.725776
Target:  5'- aCCUGUU-CUGCGGCUGCC-GCuucccCGACg -3'
miRNA:   3'- -GGACAGgGGCGCCGGCGGaCGu----GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.