Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13959 | 5' | -55.8 | NC_003521.1 | + | 153838 | 0.66 | 0.965346 |
Target: 5'- cAGGUGGugGAGcGGcugugcgccgugcgcGUggccaaCGGGCCCGAg -3' miRNA: 3'- cUCCACCugCUC-CU---------------CAa-----GUUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 100598 | 0.66 | 0.96407 |
Target: 5'- -cGGUGGACGAGGcGgcgaagcgUCucuuGGCCgGGg -3' miRNA: 3'- cuCCACCUGCUCCuCa-------AGu---UCGGgCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 71971 | 0.66 | 0.96407 |
Target: 5'- ----aGGAcauCGAGGAGaUCAAGCCCu- -3' miRNA: 3'- cuccaCCU---GCUCCUCaAGUUCGGGcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 145630 | 0.66 | 0.960735 |
Target: 5'- -cGGUgccGGGCGuGGAGUUCc-GCgCCGAg -3' miRNA: 3'- cuCCA---CCUGCuCCUCAAGuuCG-GGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 166182 | 0.66 | 0.960735 |
Target: 5'- -cGGUGGcgGCGGuGGAGUc--GGCCCGGc -3' miRNA: 3'- cuCCACC--UGCU-CCUCAaguUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 221150 | 0.66 | 0.960735 |
Target: 5'- gGAGGUGGGCGAGaucgugguGAGgu--GGCCgGGc -3' miRNA: 3'- -CUCCACCUGCUC--------CUCaaguUCGGgCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 143557 | 0.66 | 0.958634 |
Target: 5'- cGGGGUGGuCGAGGcgcucgaacaugcgcGGgucgcaggUCAGGCCgCGGa -3' miRNA: 3'- -CUCCACCuGCUCC---------------UCa-------AGUUCGG-GCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 118704 | 0.66 | 0.957192 |
Target: 5'- gGAGGgcaggcucaUGGGCGAGGGGcgC-GGCaCCGGc -3' miRNA: 3'- -CUCC---------ACCUGCUCCUCaaGuUCG-GGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 10759 | 0.66 | 0.957192 |
Target: 5'- -cGGUGGACGuacggguGGAGUgUAAGCaCCa- -3' miRNA: 3'- cuCCACCUGCu------CCUCAaGUUCG-GGcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 104510 | 0.66 | 0.957192 |
Target: 5'- -uGGUGGuCGGcGAGUUCGucauGUCCGAc -3' miRNA: 3'- cuCCACCuGCUcCUCAAGUu---CGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 214561 | 0.66 | 0.952269 |
Target: 5'- cGGGGUgcagugagcagcagGGGCGAGGGGUccUCcuGGCaCCGGu -3' miRNA: 3'- -CUCCA--------------CCUGCUCCUCA--AGu-UCG-GGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 209636 | 0.67 | 0.949466 |
Target: 5'- cGGGGaGGACGAcuaugaGGGGUUC-AGCUCGc -3' miRNA: 3'- -CUCCaCCUGCU------CCUCAAGuUCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 114305 | 0.67 | 0.945276 |
Target: 5'- cAGGcUGGuCGAGGAGga-GAGCgCGAc -3' miRNA: 3'- cUCC-ACCuGCUCCUCaagUUCGgGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 77027 | 0.67 | 0.945276 |
Target: 5'- -uGGUGGugGAGGAGgggagaaCGGGgUCGGu -3' miRNA: 3'- cuCCACCugCUCCUCaa-----GUUCgGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 165333 | 0.67 | 0.940865 |
Target: 5'- uGGGGagGGGCG-GGAua-CGGGCCCGAg -3' miRNA: 3'- -CUCCa-CCUGCuCCUcaaGUUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 120300 | 0.67 | 0.940865 |
Target: 5'- -cGGUGGGCGAGcGcgaccAGcUCAAGgCCGAc -3' miRNA: 3'- cuCCACCUGCUC-C-----UCaAGUUCgGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 91996 | 0.67 | 0.940865 |
Target: 5'- aGGGUGGAUGGGGgagGGUagGGGUCgGAa -3' miRNA: 3'- cUCCACCUGCUCC---UCAagUUCGGgCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 229317 | 0.67 | 0.93623 |
Target: 5'- uGGGGacGGcucaucugcuGCGAGGAGUcccUCGAGCCCc- -3' miRNA: 3'- -CUCCa-CC----------UGCUCCUCA---AGUUCGGGcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 142516 | 0.67 | 0.93137 |
Target: 5'- cGAGucGGcCGAGGAGgagCGGGCCCGc -3' miRNA: 3'- -CUCcaCCuGCUCCUCaa-GUUCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 224187 | 0.67 | 0.923656 |
Target: 5'- gGAGGUggaGGACGAGGAGgcggacgaugaagaCGaggaagagccuauggAGCCCGAc -3' miRNA: 3'- -CUCCA---CCUGCUCCUCaa------------GU---------------UCGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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