Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13959 | 5' | -55.8 | NC_003521.1 | + | 229317 | 0.67 | 0.93623 |
Target: 5'- uGGGGacGGcucaucugcuGCGAGGAGUcccUCGAGCCCc- -3' miRNA: 3'- -CUCCa-CC----------UGCUCCUCA---AGUUCGGGcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 224187 | 0.67 | 0.923656 |
Target: 5'- gGAGGUggaGGACGAGGAGgcggacgaugaagaCGaggaagagccuauggAGCCCGAc -3' miRNA: 3'- -CUCCA---CCUGCUCCUCaa------------GU---------------UCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 221150 | 0.66 | 0.960735 |
Target: 5'- gGAGGUGGGCGAGaucgugguGAGgu--GGCCgGGc -3' miRNA: 3'- -CUCCACCUGCUC--------CUCaaguUCGGgCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 217505 | 0.69 | 0.884418 |
Target: 5'- -uGGUGGGCGcGGGGGUgcuGGCCUGc -3' miRNA: 3'- cuCCACCUGC-UCCUCAaguUCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 216252 | 0.76 | 0.494265 |
Target: 5'- gGAGGUGGACGAGGAGgcCGccgaguaguagcgccAGCUCGu -3' miRNA: 3'- -CUCCACCUGCUCCUCaaGU---------------UCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 214561 | 0.66 | 0.952269 |
Target: 5'- cGGGGUgcagugagcagcagGGGCGAGGGGUccUCcuGGCaCCGGu -3' miRNA: 3'- -CUCCA--------------CCUGCUCCUCA--AGu-UCG-GGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 209636 | 0.67 | 0.949466 |
Target: 5'- cGGGGaGGACGAcuaugaGGGGUUC-AGCUCGc -3' miRNA: 3'- -CUCCaCCUGCU------CCUCAAGuUCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 203984 | 0.7 | 0.840315 |
Target: 5'- cGAGGcguaggacgacaUGGACGAcGAGcUCAuGCCCGAg -3' miRNA: 3'- -CUCC------------ACCUGCUcCUCaAGUuCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 186937 | 0.69 | 0.884418 |
Target: 5'- aAGGagaGGACGAGGAGUgcuggGGGCCCc- -3' miRNA: 3'- cUCCa--CCUGCUCCUCAag---UUCGGGcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 166182 | 0.66 | 0.960735 |
Target: 5'- -cGGUGGcgGCGGuGGAGUc--GGCCCGGc -3' miRNA: 3'- cuCCACC--UGCU-CCUCAaguUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 165444 | 0.7 | 0.832303 |
Target: 5'- ---uUGGGCGAGGGGUggCAGGCCUuGAg -3' miRNA: 3'- cuccACCUGCUCCUCAa-GUUCGGG-CU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 165333 | 0.67 | 0.940865 |
Target: 5'- uGGGGagGGGCG-GGAua-CGGGCCCGAg -3' miRNA: 3'- -CUCCa-CCUGCuCCUcaaGUUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 154189 | 0.69 | 0.855795 |
Target: 5'- cGGGUGGcCGAGGAGUggAAGCUg-- -3' miRNA: 3'- cUCCACCuGCUCCUCAagUUCGGgcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 153838 | 0.66 | 0.965346 |
Target: 5'- cAGGUGGugGAGcGGcugugcgccgugcgcGUggccaaCGGGCCCGAg -3' miRNA: 3'- cUCCACCugCUC-CU---------------CAa-----GUUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 145630 | 0.66 | 0.960735 |
Target: 5'- -cGGUgccGGGCGuGGAGUUCc-GCgCCGAg -3' miRNA: 3'- cuCCA---CCUGCuCCUCAAGuuCG-GGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 144919 | 0.71 | 0.762642 |
Target: 5'- -cGGUGGcCGAGGAGUUCAuGUCgCGc -3' miRNA: 3'- cuCCACCuGCUCCUCAAGUuCGG-GCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 143557 | 0.66 | 0.958634 |
Target: 5'- cGGGGUGGuCGAGGcgcucgaacaugcgcGGgucgcaggUCAGGCCgCGGa -3' miRNA: 3'- -CUCCACCuGCUCC---------------UCa-------AGUUCGG-GCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 142516 | 0.67 | 0.93137 |
Target: 5'- cGAGucGGcCGAGGAGgagCGGGCCCGc -3' miRNA: 3'- -CUCcaCCuGCUCCUCaa-GUUCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 133723 | 0.71 | 0.797735 |
Target: 5'- cGAGGUGGGC-AGGAGaugcucgguaugcUggccggCAGGCCCGGc -3' miRNA: 3'- -CUCCACCUGcUCCUC-------------Aa-----GUUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 120300 | 0.67 | 0.940865 |
Target: 5'- -cGGUGGGCGAGcGcgaccAGcUCAAGgCCGAc -3' miRNA: 3'- cuCCACCUGCUC-C-----UCaAGUUCgGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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