miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 29094 1.08 0.001924
Target:  5'- cGUCGUCCAGGCGCCGCAGACACGCCAg -3'
miRNA:   3'- -CAGCAGGUCCGCGGCGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 142110 0.72 0.453123
Target:  5'- -gCGgugCCGGGaGCCGUAGGCGCGUCGc -3'
miRNA:   3'- caGCa--GGUCCgCGGCGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 63290 0.7 0.553146
Target:  5'- -cUGUCCgcugguGGGCGUCGUGGGCGcCGCCGg -3'
miRNA:   3'- caGCAGG------UCCGCGGCGUCUGU-GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 212654 0.66 0.821708
Target:  5'- -gCGaCCcgaagaGGGCGUCGCGGGCAugguCGCCGc -3'
miRNA:   3'- caGCaGG------UCCGCGGCGUCUGU----GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 99871 0.76 0.293122
Target:  5'- -cCG-CCGGGCGCUGCAGgucaccaACGCGCCGc -3'
miRNA:   3'- caGCaGGUCCGCGGCGUC-------UGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 201971 0.76 0.293766
Target:  5'- aGUCGUCCGGGCGuCUGCAGcgGgAUGCCc -3'
miRNA:   3'- -CAGCAGGUCCGC-GGCGUC--UgUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 74453 0.75 0.313604
Target:  5'- cGUCGggccgcgcgCCGGGCGCCGCGG-CGCagcgGCCAg -3'
miRNA:   3'- -CAGCa--------GGUCCGCGGCGUCuGUG----CGGU- -5'
13960 3' -60.9 NC_003521.1 + 62122 0.75 0.327384
Target:  5'- gGUCGUCauggaCAGGCGCCGCGGuuccGCGgCGCCc -3'
miRNA:   3'- -CAGCAG-----GUCCGCGGCGUC----UGU-GCGGu -5'
13960 3' -60.9 NC_003521.1 + 144447 0.74 0.356271
Target:  5'- cGUUcUCCAGcGCGCgGCAGGCgGCGCCGg -3'
miRNA:   3'- -CAGcAGGUC-CGCGgCGUCUG-UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 43239 0.72 0.444506
Target:  5'- gGUCGUCgguGGGCGCCgGCGGGuCGCGCUc -3'
miRNA:   3'- -CAGCAGg--UCCGCGG-CGUCU-GUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 77894 0.73 0.386903
Target:  5'- cGUCGaUCCucucggccGGCGCCGUcacGGGCGCGCCc -3'
miRNA:   3'- -CAGC-AGGu-------CCGCGGCG---UCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 130455 0.74 0.354043
Target:  5'- aGUCGUCCAuGugcaggcugagaucGCGCgGCAGGCAgGCCAg -3'
miRNA:   3'- -CAGCAGGU-C--------------CGCGgCGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 91920 0.8 0.161205
Target:  5'- -gCG-CCAGGgaGCCGCGGGCACGCCGg -3'
miRNA:   3'- caGCaGGUCCg-CGGCGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 20177 0.73 0.386903
Target:  5'- -gCGUCCAGGaccaccaGCCGCucccGCACGCCGu -3'
miRNA:   3'- caGCAGGUCCg------CGGCGuc--UGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 137760 0.77 0.251315
Target:  5'- -aCGUCCcagaccucgcGGCGCCGC-GACACGCCGg -3'
miRNA:   3'- caGCAGGu---------CCGCGGCGuCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 122008 0.74 0.348884
Target:  5'- aGUCGggcaagCAGGUGUgGCAGGCGCGCCu -3'
miRNA:   3'- -CAGCag----GUCCGCGgCGUCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 94343 0.73 0.410988
Target:  5'- cGUCGccUCCGGGUGaCuCAGACACGCCGc -3'
miRNA:   3'- -CAGC--AGGUCCGCgGcGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 181377 0.71 0.506612
Target:  5'- gGUCG-CCuGGUGgCGCAauucGACACGCCGg -3'
miRNA:   3'- -CAGCaGGuCCGCgGCGU----CUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 137837 0.76 0.268858
Target:  5'- uGUCGUCgUAGGUcagGCCGCAGGUGCGCCAg -3'
miRNA:   3'- -CAGCAG-GUCCG---CGGCGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 113957 0.75 0.300268
Target:  5'- cGUCGugcaccUCCAGGCGgCGCAGAU-CGCCGu -3'
miRNA:   3'- -CAGC------AGGUCCGCgGCGUCUGuGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.