Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 139318 | 0.66 | 0.914583 |
Target: 5'- gGGUGaucuGCGGcGCcgUuUUGGAGCGCAGGu -3' miRNA: 3'- -CCAC----UGCC-CGa-AcAGCCUCGCGUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 69420 | 0.66 | 0.909396 |
Target: 5'- cGGUGACGGcGCgcaccaccacggUGGAGuCGCAGGu -3' miRNA: 3'- -CCACUGCC-CGaaca--------GCCUC-GCGUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 170529 | 0.66 | 0.914583 |
Target: 5'- uGUGACGGGga---CGGGGgGCAGGAg -3' miRNA: 3'- cCACUGCCCgaacaGCCUCgCGUCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 238468 | 0.66 | 0.920135 |
Target: 5'- --cGGCGGGCggGgCGGAGaCGCGGc- -3' miRNA: 3'- ccaCUGCCCGaaCaGCCUC-GCGUCuu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 213530 | 0.66 | 0.925463 |
Target: 5'- aGGaUGGCGGGCagcUCGGAGCacCAGGu -3' miRNA: 3'- -CC-ACUGCCCGaacAGCCUCGc-GUCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home