miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 105599 0.72 0.433504
Target:  5'- cGCcGGCG--CAGCCgCUCaGGCGCUGCa -3'
miRNA:   3'- -CGaCCGUugGUCGG-GAG-CCGCGACGa -5'
13962 5' -61 NC_003521.1 + 148823 0.72 0.433504
Target:  5'- cGC-GGCGACCGccuGCCCUCGGCcgaGgUGCg -3'
miRNA:   3'- -CGaCCGUUGGU---CGGGAGCCG---CgACGa -5'
13962 5' -61 NC_003521.1 + 234759 0.72 0.450723
Target:  5'- gGCUGGCGugAUCAcGCCCUgCGGgGCcGCUg -3'
miRNA:   3'- -CGACCGU--UGGU-CGGGA-GCCgCGaCGA- -5'
13962 5' -61 NC_003521.1 + 3709 0.72 0.416675
Target:  5'- ---aGCAGCCuguGCCCUCGGCGUcgGCa -3'
miRNA:   3'- cgacCGUUGGu--CGGGAGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 59015 0.71 0.504496
Target:  5'- gGCUGGaccUCAGCCCgcagUGGCuGCUGCa -3'
miRNA:   3'- -CGACCguuGGUCGGGa---GCCG-CGACGa -5'
13962 5' -61 NC_003521.1 + 202525 0.71 0.486243
Target:  5'- cGCUGGcCGACgAGCUCUCGcaccUGCUGCg -3'
miRNA:   3'- -CGACC-GUUGgUCGGGAGCc---GCGACGa -5'
13962 5' -61 NC_003521.1 + 224407 0.71 0.486243
Target:  5'- aGCcGGUAcaccucGCCGGCCa--GGCGCUGCg -3'
miRNA:   3'- -CGaCCGU------UGGUCGGgagCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 224743 0.71 0.486243
Target:  5'- cGCaGGCGGCCAGCgCgUCGGgGCUccgGCa -3'
miRNA:   3'- -CGaCCGUUGGUCG-GgAGCCgCGA---CGa -5'
13962 5' -61 NC_003521.1 + 219406 0.71 0.480829
Target:  5'- uGCUGGUAcCCuGCCugucucugcucugcgCUaCGGCGCUGCUc -3'
miRNA:   3'- -CGACCGUuGGuCGG---------------GA-GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 164718 0.71 0.495331
Target:  5'- aGC-GGCGACCgugacggccgcGGCCgCggUGGCGCUGCUa -3'
miRNA:   3'- -CGaCCGUUGG-----------UCGG-Ga-GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 31075 0.71 0.486243
Target:  5'- cGCgGGUuucgccGGCgGGCCCUCGGUGC-GCUa -3'
miRNA:   3'- -CGaCCG------UUGgUCGGGAGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 238791 0.71 0.486243
Target:  5'- cGCUGGcCGACgAGCUCUCGcaccUGCUGCg -3'
miRNA:   3'- -CGACC-GUUGgUCGGGAGCc---GCGACGa -5'
13962 5' -61 NC_003521.1 + 163087 0.71 0.485339
Target:  5'- -aUGGUcgcgcagAGCCAGCCCUUGGUGagaUGCa -3'
miRNA:   3'- cgACCG-------UUGGUCGGGAGCCGCg--ACGa -5'
13962 5' -61 NC_003521.1 + 194791 0.71 0.459471
Target:  5'- cGCUGccgcCAugUGGCCCUucaCGGUGCUGCUg -3'
miRNA:   3'- -CGACc---GUugGUCGGGA---GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 197556 0.71 0.459471
Target:  5'- aGC-GGCGGCgAGCuCCUgagcucgggagcUGGCGCUGCUa -3'
miRNA:   3'- -CGaCCGUUGgUCG-GGA------------GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 165780 0.7 0.523037
Target:  5'- uGCcGaaGGCCAGCCCgcuGGCGCUGCc -3'
miRNA:   3'- -CGaCcgUUGGUCGGGag-CCGCGACGa -5'
13962 5' -61 NC_003521.1 + 217348 0.7 0.523037
Target:  5'- --cGGCGGCCGGUCCUCGuacuUGCUGUg -3'
miRNA:   3'- cgaCCGUUGGUCGGGAGCc---GCGACGa -5'
13962 5' -61 NC_003521.1 + 225590 0.7 0.532407
Target:  5'- cGCUcGGCGGCCucGCgCUCGGcCGcCUGCa -3'
miRNA:   3'- -CGA-CCGUUGGu-CGgGAGCC-GC-GACGa -5'
13962 5' -61 NC_003521.1 + 58053 0.7 0.541835
Target:  5'- uGCUGGCGGCCA-CCCgauaCGGCGaagaggGCa -3'
miRNA:   3'- -CGACCGUUGGUcGGGa---GCCGCga----CGa -5'
13962 5' -61 NC_003521.1 + 236592 0.7 0.551319
Target:  5'- --cGGCAGCCAG-CCUCGGgGCUcCg -3'
miRNA:   3'- cgaCCGUUGGUCgGGAGCCgCGAcGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.