miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 3' -61.3 NC_003521.1 + 210260 1.07 0.001909
Target:  5'- cCUGCCCUACCCCGAGGGCUACACCCUg -3'
miRNA:   3'- -GACGGGAUGGGGCUCCCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 152279 0.79 0.171043
Target:  5'- gUGCCCUGCCCCGAGGaggccguuucGgUGCGCCUg -3'
miRNA:   3'- gACGGGAUGGGGCUCC----------CgAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 193403 0.76 0.242651
Target:  5'- gUGCCCUGgCCCGAGcgauGCUACAUCCa -3'
miRNA:   3'- gACGGGAUgGGGCUCc---CGAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 100903 0.75 0.303168
Target:  5'- -gGCCgUGCCCCGAGGaGCaGCGCgCCUc -3'
miRNA:   3'- gaCGGgAUGGGGCUCC-CGaUGUG-GGA- -5'
13963 3' -61.3 NC_003521.1 + 130149 0.74 0.337535
Target:  5'- gCUGCC--GCCaCCGAGcGCUACGCCCUg -3'
miRNA:   3'- -GACGGgaUGG-GGCUCcCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 54322 0.74 0.344739
Target:  5'- -cGCCCgagAUCCCGAcgGGGCUcuCGCCCUg -3'
miRNA:   3'- gaCGGGa--UGGGGCU--CCCGAu-GUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 234284 0.74 0.350582
Target:  5'- -cGCCCUGCCCUG-GGGCgggacgcagacCGCCCUc -3'
miRNA:   3'- gaCGGGAUGGGGCuCCCGau---------GUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 135215 0.73 0.389461
Target:  5'- -cGCCCUGCugcagcgCCUGAGcGGCUGCGCCg- -3'
miRNA:   3'- gaCGGGAUG-------GGGCUC-CCGAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 149572 0.72 0.456709
Target:  5'- gUGuCCCggacgggACCCCGAGGGCccCAUCCg -3'
miRNA:   3'- gAC-GGGa------UGGGGCUCCCGauGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 62763 0.71 0.474257
Target:  5'- -gGCUacgaUGCCCUGAGGGCgaggugugcUACACCCc -3'
miRNA:   3'- gaCGGg---AUGGGGCUCCCG---------AUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 26581 0.71 0.483157
Target:  5'- gCUGCUgUGCCUcuacacggucuuCGuGGGCUGCAUCCUg -3'
miRNA:   3'- -GACGGgAUGGG------------GCuCCCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 112448 0.71 0.492137
Target:  5'- -gGCCCaggcgGCCCUGGuGGGC-GCGCCCg -3'
miRNA:   3'- gaCGGGa----UGGGGCU-CCCGaUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 150490 0.71 0.492137
Target:  5'- -aGCCCUGCCa-GGGGGCgUAC-CCCa -3'
miRNA:   3'- gaCGGGAUGGggCUCCCG-AUGuGGGa -5'
13963 3' -61.3 NC_003521.1 + 6051 0.71 0.510322
Target:  5'- gUGCCCcagcgGCCCCGcAGGGCgugaucACGCCa- -3'
miRNA:   3'- gACGGGa----UGGGGC-UCCCGa-----UGUGGga -5'
13963 3' -61.3 NC_003521.1 + 222095 0.7 0.516753
Target:  5'- -cGCCCUGCagcgccggcagcguCUCGAGGcGCUGCGCCg- -3'
miRNA:   3'- gaCGGGAUG--------------GGGCUCC-CGAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 135175 0.7 0.519519
Target:  5'- -cGCCCacCCCCGAgcuGGGCUucacgcacACGCCCg -3'
miRNA:   3'- gaCGGGauGGGGCU---CCCGA--------UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 13958 0.7 0.527852
Target:  5'- gCUGCCCUcgcuggaGCCCUGAuGGGCcu-GCCCg -3'
miRNA:   3'- -GACGGGA-------UGGGGCU-CCCGaugUGGGa -5'
13963 3' -61.3 NC_003521.1 + 234658 0.7 0.528781
Target:  5'- uCUGCgCCUgGCCCCGccaGGGGUUGCugCUc -3'
miRNA:   3'- -GACG-GGA-UGGGGC---UCCCGAUGugGGa -5'
13963 3' -61.3 NC_003521.1 + 111746 0.7 0.538103
Target:  5'- cCUGCagUACgCCGAGGGuCUGCGCCa- -3'
miRNA:   3'- -GACGggAUGgGGCUCCC-GAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 21242 0.7 0.54748
Target:  5'- cCUGCCCUuggaauggACCCuCGAGGaGCUG-GCCCc -3'
miRNA:   3'- -GACGGGA--------UGGG-GCUCC-CGAUgUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.