miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 3' -61.3 NC_003521.1 + 2322 0.68 0.662428
Target:  5'- gCUGCgCgccgGCCuCCuGGGGCUGCugACCCUg -3'
miRNA:   3'- -GACGgGa---UGG-GGcUCCCGAUG--UGGGA- -5'
13963 3' -61.3 NC_003521.1 + 5910 0.66 0.765162
Target:  5'- aCUGCUgUACCgCGAGGGgCUACGaugacgguUCCg -3'
miRNA:   3'- -GACGGgAUGGgGCUCCC-GAUGU--------GGGa -5'
13963 3' -61.3 NC_003521.1 + 6051 0.71 0.510322
Target:  5'- gUGCCCcagcgGCCCCGcAGGGCgugaucACGCCa- -3'
miRNA:   3'- gACGGGa----UGGGGC-UCCCGa-----UGUGGga -5'
13963 3' -61.3 NC_003521.1 + 13958 0.7 0.527852
Target:  5'- gCUGCCCUcgcuggaGCCCUGAuGGGCcu-GCCCg -3'
miRNA:   3'- -GACGGGA-------UGGGGCU-CCCGaugUGGGa -5'
13963 3' -61.3 NC_003521.1 + 14220 0.68 0.65281
Target:  5'- -aGCCCcugACgCCGcuGGGCUACGCCg- -3'
miRNA:   3'- gaCGGGa--UGgGGCu-CCCGAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 16190 0.66 0.791408
Target:  5'- cCUGUCCgagugcugGCCCuuCGAGguGGCgGCGCCCUg -3'
miRNA:   3'- -GACGGGa-------UGGG--GCUC--CCGaUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 16803 0.66 0.774026
Target:  5'- -cGCCC-GCCCCGAccgccGGGCccgccGCugCCg -3'
miRNA:   3'- gaCGGGaUGGGGCU-----CCCGa----UGugGGa -5'
13963 3' -61.3 NC_003521.1 + 18955 0.66 0.803276
Target:  5'- -cGCCCUACCCagcgacaacgaggaGGGGGUcgaggACGCgCCg -3'
miRNA:   3'- gaCGGGAUGGGg-------------CUCCCGa----UGUG-GGa -5'
13963 3' -61.3 NC_003521.1 + 21242 0.7 0.54748
Target:  5'- cCUGCCCUuggaauggACCCuCGAGGaGCUG-GCCCc -3'
miRNA:   3'- -GACGGGA--------UGGG-GCUCC-CGAUgUGGGa -5'
13963 3' -61.3 NC_003521.1 + 25401 0.69 0.585451
Target:  5'- -gGCUCUGCUUCacgGAGGGCU-CGCCCa -3'
miRNA:   3'- gaCGGGAUGGGG---CUCCCGAuGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 26581 0.71 0.483157
Target:  5'- gCUGCUgUGCCUcuacacggucuuCGuGGGCUGCAUCCUg -3'
miRNA:   3'- -GACGGgAUGGG------------GCuCCCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 29933 0.67 0.737972
Target:  5'- -gGCCUggcacgGCCaCCGAGGcGacgUACACCCUg -3'
miRNA:   3'- gaCGGGa-----UGG-GGCUCC-Cg--AUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 35969 0.66 0.756193
Target:  5'- gUGCCCgagaUCCGGGuGGaCUACACCUc -3'
miRNA:   3'- gACGGGaug-GGGCUC-CC-GAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 39599 0.67 0.710046
Target:  5'- -gGUCCUGCCCUGGGuGGCgGCGuCUCg -3'
miRNA:   3'- gaCGGGAUGGGGCUC-CCGaUGU-GGGa -5'
13963 3' -61.3 NC_003521.1 + 42788 0.69 0.585451
Target:  5'- cCUGCCCgUGCagCCCGGcGGCUGCACgCg -3'
miRNA:   3'- -GACGGG-AUG--GGGCUcCCGAUGUGgGa -5'
13963 3' -61.3 NC_003521.1 + 54322 0.74 0.344739
Target:  5'- -cGCCCgagAUCCCGAcgGGGCUcuCGCCCUg -3'
miRNA:   3'- gaCGGGa--UGGGGCU--CCCGAu-GUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 55630 0.66 0.765162
Target:  5'- -gGCCC-ACaCCGAGGGCgucACGCuCCa -3'
miRNA:   3'- gaCGGGaUGgGGCUCCCGa--UGUG-GGa -5'
13963 3' -61.3 NC_003521.1 + 59229 0.67 0.719423
Target:  5'- -gGCCCUggacGCCCUGgaggugaacguGGGGCUGCugCg- -3'
miRNA:   3'- gaCGGGA----UGGGGC-----------UCCCGAUGugGga -5'
13963 3' -61.3 NC_003521.1 + 59514 0.68 0.691122
Target:  5'- -cGCCCUGgCCCGcGGGCg--GCCUg -3'
miRNA:   3'- gaCGGGAUgGGGCuCCCGaugUGGGa -5'
13963 3' -61.3 NC_003521.1 + 60734 0.66 0.765162
Target:  5'- gCUGCCCU-CCCUGgacGGGGUgACGCgCa -3'
miRNA:   3'- -GACGGGAuGGGGC---UCCCGaUGUGgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.