miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 3' -61.3 NC_003521.1 + 66610 0.66 0.774026
Target:  5'- cCUGCCCgacccgcgcgACCCCaacguGGGCgcgucGCACCUg -3'
miRNA:   3'- -GACGGGa---------UGGGGcu---CCCGa----UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 152357 0.68 0.681591
Target:  5'- gCUGCUCUgggGCCggCCG-GGGCggcGCGCCCUc -3'
miRNA:   3'- -GACGGGA---UGG--GGCuCCCGa--UGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 39599 0.67 0.710046
Target:  5'- -gGUCCUGCCCUGGGuGGCgGCGuCUCg -3'
miRNA:   3'- gaCGGGAUGGGGCUC-CCGaUGU-GGGa -5'
13963 3' -61.3 NC_003521.1 + 79595 0.67 0.716616
Target:  5'- aCUGCCgCUGCCgCCGccaucgaacuugccGGGGCgaccgcgGCGCCUc -3'
miRNA:   3'- -GACGG-GAUGG-GGC--------------UCCCGa------UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 59229 0.67 0.719423
Target:  5'- -gGCCCUggacGCCCUGgaggugaacguGGGGCUGCugCg- -3'
miRNA:   3'- gaCGGGA----UGGGGC-----------UCCCGAUGugGga -5'
13963 3' -61.3 NC_003521.1 + 138846 0.67 0.747127
Target:  5'- -gGCCUgcgGCCa-GAuGGGCUGCACCUUc -3'
miRNA:   3'- gaCGGGa--UGGggCU-CCCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 60734 0.66 0.765162
Target:  5'- gCUGCCCU-CCCUGgacGGGGUgACGCgCa -3'
miRNA:   3'- -GACGGGAuGGGGC---UCCCGaUGUGgGa -5'
13963 3' -61.3 NC_003521.1 + 55630 0.66 0.765162
Target:  5'- -gGCCC-ACaCCGAGGGCgucACGCuCCa -3'
miRNA:   3'- gaCGGGaUGgGGCUCCCGa--UGUG-GGa -5'
13963 3' -61.3 NC_003521.1 + 232554 0.66 0.765162
Target:  5'- gUGgCCUACUaCGGGGGCUGCugUg- -3'
miRNA:   3'- gACgGGAUGGgGCUCCCGAUGugGga -5'
13963 3' -61.3 NC_003521.1 + 67685 0.68 0.672023
Target:  5'- -aGCCCaagUACgCCGAGGuCUACGCCUc -3'
miRNA:   3'- gaCGGG---AUGgGGCUCCcGAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 202550 0.68 0.662428
Target:  5'- gCUGCgCgccgGCCuCCuGGGGCUGCugACCCUg -3'
miRNA:   3'- -GACGgGa---UGG-GGcUCCCGAUG--UGGGA- -5'
13963 3' -61.3 NC_003521.1 + 79215 0.68 0.65281
Target:  5'- -aGCaCgUugCCCGAGGGCaccagAUGCCCg -3'
miRNA:   3'- gaCG-GgAugGGGCUCCCGa----UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 234284 0.74 0.350582
Target:  5'- -cGCCCUGCCCUG-GGGCgggacgcagacCGCCCUc -3'
miRNA:   3'- gaCGGGAUGGGGCuCCCGau---------GUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 112448 0.71 0.492137
Target:  5'- -gGCCCaggcgGCCCUGGuGGGC-GCGCCCg -3'
miRNA:   3'- gaCGGGa----UGGGGCU-CCCGaUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 222095 0.7 0.516753
Target:  5'- -cGCCCUGCagcgccggcagcguCUCGAGGcGCUGCGCCg- -3'
miRNA:   3'- gaCGGGAUG--------------GGGCUCC-CGAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 111746 0.7 0.538103
Target:  5'- cCUGCagUACgCCGAGGGuCUGCGCCa- -3'
miRNA:   3'- -GACGggAUGgGGCUCCC-GAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 42788 0.69 0.585451
Target:  5'- cCUGCCCgUGCagCCCGGcGGCUGCACgCg -3'
miRNA:   3'- -GACGGG-AUG--GGGCUcCCGAUGUGgGa -5'
13963 3' -61.3 NC_003521.1 + 91758 0.69 0.604638
Target:  5'- cCUaCCCUACCCCGcGGGUcccGCAUCCc -3'
miRNA:   3'- -GAcGGGAUGGGGCuCCCGa--UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 236596 0.69 0.633538
Target:  5'- -aGCCa-GCCUCG-GGGCUccgACACCCUu -3'
miRNA:   3'- gaCGGgaUGGGGCuCCCGA---UGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 136134 0.69 0.633538
Target:  5'- -cGCUCUACCCCGuGGcGCgcCGCCa- -3'
miRNA:   3'- gaCGGGAUGGGGCuCC-CGauGUGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.