miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 3' -61.3 NC_003521.1 + 210260 1.07 0.001909
Target:  5'- cCUGCCCUACCCCGAGGGCUACACCCUg -3'
miRNA:   3'- -GACGGGAUGGGGCUCCCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 25401 0.69 0.585451
Target:  5'- -gGCUCUGCUUCacgGAGGGCU-CGCCCa -3'
miRNA:   3'- gaCGGGAUGGGG---CUCCCGAuGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 164986 0.69 0.595032
Target:  5'- -cGCCCaucuuCCCCGAGGGCgagauCGgCCg -3'
miRNA:   3'- gaCGGGau---GGGGCUCCCGau---GUgGGa -5'
13963 3' -61.3 NC_003521.1 + 166271 0.66 0.803276
Target:  5'- -cGCCCUcagacauacuuguccACCacguaCGAGGGCUcCACCa- -3'
miRNA:   3'- gaCGGGA---------------UGGg----GCUCCCGAuGUGGga -5'
13963 3' -61.3 NC_003521.1 + 54322 0.74 0.344739
Target:  5'- -cGCCCgagAUCCCGAcgGGGCUcuCGCCCUg -3'
miRNA:   3'- gaCGGGa--UGGGGCU--CCCGAu-GUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 135215 0.73 0.389461
Target:  5'- -cGCCCUGCugcagcgCCUGAGcGGCUGCGCCg- -3'
miRNA:   3'- gaCGGGAUG-------GGGCUC-CCGAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 62763 0.71 0.474257
Target:  5'- -gGCUacgaUGCCCUGAGGGCgaggugugcUACACCCc -3'
miRNA:   3'- gaCGGg---AUGGGGCUCCCG---------AUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 26581 0.71 0.483157
Target:  5'- gCUGCUgUGCCUcuacacggucuuCGuGGGCUGCAUCCUg -3'
miRNA:   3'- -GACGGgAUGGG------------GCuCCCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 135175 0.7 0.519519
Target:  5'- -cGCCCacCCCCGAgcuGGGCUucacgcacACGCCCg -3'
miRNA:   3'- gaCGGGauGGGGCU---CCCGA--------UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 88313 0.7 0.566384
Target:  5'- -cGCCCUGgaccccauCCCCGAGGccuauCUGCACCUc -3'
miRNA:   3'- gaCGGGAU--------GGGGCUCCc----GAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 234658 0.7 0.528781
Target:  5'- uCUGCgCCUgGCCCCGccaGGGGUUGCugCUc -3'
miRNA:   3'- -GACG-GGA-UGGGGC---UCCCGAUGugGGa -5'
13963 3' -61.3 NC_003521.1 + 6051 0.71 0.510322
Target:  5'- gUGCCCcagcgGCCCCGcAGGGCgugaucACGCCa- -3'
miRNA:   3'- gACGGGa----UGGGGC-UCCCGa-----UGUGGga -5'
13963 3' -61.3 NC_003521.1 + 152279 0.79 0.171043
Target:  5'- gUGCCCUGCCCCGAGGaggccguuucGgUGCGCCUg -3'
miRNA:   3'- gACGGGAUGGGGCUCC----------CgAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 21242 0.7 0.54748
Target:  5'- cCUGCCCUuggaauggACCCuCGAGGaGCUG-GCCCc -3'
miRNA:   3'- -GACGGGA--------UGGG-GCUCC-CGAUgUGGGa -5'
13963 3' -61.3 NC_003521.1 + 193403 0.76 0.242651
Target:  5'- gUGCCCUGgCCCGAGcgauGCUACAUCCa -3'
miRNA:   3'- gACGGGAUgGGGCUCc---CGAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 150490 0.71 0.492137
Target:  5'- -aGCCCUGCCa-GGGGGCgUAC-CCCa -3'
miRNA:   3'- gaCGGGAUGGggCUCCCG-AUGuGGGa -5'
13963 3' -61.3 NC_003521.1 + 134617 0.7 0.566384
Target:  5'- -aGCCuCUAcauCCCCGAGGGCUucuucggcauCACCUUc -3'
miRNA:   3'- gaCGG-GAU---GGGGCUCCCGAu---------GUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 68777 0.69 0.595032
Target:  5'- -aGCCCgccgagACCaCCGAGGaCUuagACACCCUg -3'
miRNA:   3'- gaCGGGa-----UGG-GGCUCCcGA---UGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 100903 0.75 0.303168
Target:  5'- -gGCCgUGCCCCGAGGaGCaGCGCgCCUc -3'
miRNA:   3'- gaCGGgAUGGGGCUCC-CGaUGUG-GGA- -5'
13963 3' -61.3 NC_003521.1 + 149572 0.72 0.456709
Target:  5'- gUGuCCCggacgggACCCCGAGGGCccCAUCCg -3'
miRNA:   3'- gAC-GGGa------UGGGGCUCCCGauGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.