Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13963 | 3' | -61.3 | NC_003521.1 | + | 236596 | 0.69 | 0.633538 |
Target: 5'- -aGCCa-GCCUCG-GGGCUccgACACCCUu -3' miRNA: 3'- gaCGGgaUGGGGCuCCCGA---UGUGGGA- -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 136134 | 0.69 | 0.633538 |
Target: 5'- -cGCUCUACCCCGuGGcGCgcCGCCa- -3' miRNA: 3'- gaCGGGAUGGGGCuCC-CGauGUGGga -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 79215 | 0.68 | 0.65281 |
Target: 5'- -aGCaCgUugCCCGAGGGCaccagAUGCCCg -3' miRNA: 3'- gaCG-GgAugGGGCUCCCGa----UGUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 6051 | 0.71 | 0.510322 |
Target: 5'- gUGCCCcagcgGCCCCGcAGGGCgugaucACGCCa- -3' miRNA: 3'- gACGGGa----UGGGGC-UCCCGa-----UGUGGga -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 135175 | 0.7 | 0.519519 |
Target: 5'- -cGCCCacCCCCGAgcuGGGCUucacgcacACGCCCg -3' miRNA: 3'- gaCGGGauGGGGCU---CCCGA--------UGUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 13958 | 0.7 | 0.527852 |
Target: 5'- gCUGCCCUcgcuggaGCCCUGAuGGGCcu-GCCCg -3' miRNA: 3'- -GACGGGA-------UGGGGCU-CCCGaugUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 234658 | 0.7 | 0.528781 |
Target: 5'- uCUGCgCCUgGCCCCGccaGGGGUUGCugCUc -3' miRNA: 3'- -GACG-GGA-UGGGGC---UCCCGAUGugGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 21242 | 0.7 | 0.54748 |
Target: 5'- cCUGCCCUuggaauggACCCuCGAGGaGCUG-GCCCc -3' miRNA: 3'- -GACGGGA--------UGGG-GCUCC-CGAUgUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 134617 | 0.7 | 0.566384 |
Target: 5'- -aGCCuCUAcauCCCCGAGGGCUucuucggcauCACCUUc -3' miRNA: 3'- gaCGG-GAU---GGGGCUCCCGAu---------GUGGGA- -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 88313 | 0.7 | 0.566384 |
Target: 5'- -cGCCCUGgaccccauCCCCGAGGccuauCUGCACCUc -3' miRNA: 3'- gaCGGGAU--------GGGGCUCCc----GAUGUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 150490 | 0.71 | 0.492137 |
Target: 5'- -aGCCCUGCCa-GGGGGCgUAC-CCCa -3' miRNA: 3'- gaCGGGAUGGggCUCCCG-AUGuGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 26581 | 0.71 | 0.483157 |
Target: 5'- gCUGCUgUGCCUcuacacggucuuCGuGGGCUGCAUCCUg -3' miRNA: 3'- -GACGGgAUGGG------------GCuCCCGAUGUGGGA- -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 62763 | 0.71 | 0.474257 |
Target: 5'- -gGCUacgaUGCCCUGAGGGCgaggugugcUACACCCc -3' miRNA: 3'- gaCGGg---AUGGGGCUCCCG---------AUGUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 149572 | 0.72 | 0.456709 |
Target: 5'- gUGuCCCggacgggACCCCGAGGGCccCAUCCg -3' miRNA: 3'- gAC-GGGa------UGGGGCUCCCGauGUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 135215 | 0.73 | 0.389461 |
Target: 5'- -cGCCCUGCugcagcgCCUGAGcGGCUGCGCCg- -3' miRNA: 3'- gaCGGGAUG-------GGGCUC-CCGAUGUGGga -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 54322 | 0.74 | 0.344739 |
Target: 5'- -cGCCCgagAUCCCGAcgGGGCUcuCGCCCUg -3' miRNA: 3'- gaCGGGa--UGGGGCU--CCCGAu-GUGGGA- -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 100903 | 0.75 | 0.303168 |
Target: 5'- -gGCCgUGCCCCGAGGaGCaGCGCgCCUc -3' miRNA: 3'- gaCGGgAUGGGGCUCC-CGaUGUG-GGA- -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 193403 | 0.76 | 0.242651 |
Target: 5'- gUGCCCUGgCCCGAGcgauGCUACAUCCa -3' miRNA: 3'- gACGGGAUgGGGCUCc---CGAUGUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 152279 | 0.79 | 0.171043 |
Target: 5'- gUGCCCUGCCCCGAGGaggccguuucGgUGCGCCUg -3' miRNA: 3'- gACGGGAUGGGGCUCC----------CgAUGUGGGa -5' |
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13963 | 3' | -61.3 | NC_003521.1 | + | 166271 | 0.66 | 0.803276 |
Target: 5'- -cGCCCUcagacauacuuguccACCacguaCGAGGGCUcCACCa- -3' miRNA: 3'- gaCGGGA---------------UGGg----GCUCCCGAuGUGGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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