miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 3' -61.3 NC_003521.1 + 62763 0.71 0.474257
Target:  5'- -gGCUacgaUGCCCUGAGGGCgaggugugcUACACCCc -3'
miRNA:   3'- gaCGGg---AUGGGGCUCCCG---------AUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 66610 0.66 0.774026
Target:  5'- cCUGCCCgacccgcgcgACCCCaacguGGGCgcgucGCACCUg -3'
miRNA:   3'- -GACGGGa---------UGGGGcu---CCCGa----UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 67685 0.68 0.672023
Target:  5'- -aGCCCaagUACgCCGAGGuCUACGCCUc -3'
miRNA:   3'- gaCGGG---AUGgGGCUCCcGAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 68777 0.69 0.595032
Target:  5'- -aGCCCgccgagACCaCCGAGGaCUuagACACCCUg -3'
miRNA:   3'- gaCGGGa-----UGG-GGCUCCcGA---UGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 79215 0.68 0.65281
Target:  5'- -aGCaCgUugCCCGAGGGCaccagAUGCCCg -3'
miRNA:   3'- gaCG-GgAugGGGCUCCCGa----UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 79595 0.67 0.716616
Target:  5'- aCUGCCgCUGCCgCCGccaucgaacuugccGGGGCgaccgcgGCGCCUc -3'
miRNA:   3'- -GACGG-GAUGG-GGC--------------UCCCGa------UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 88313 0.7 0.566384
Target:  5'- -cGCCCUGgaccccauCCCCGAGGccuauCUGCACCUc -3'
miRNA:   3'- gaCGGGAU--------GGGGCUCCc----GAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 91758 0.69 0.604638
Target:  5'- cCUaCCCUACCCCGcGGGUcccGCAUCCc -3'
miRNA:   3'- -GAcGGGAUGGGGCuCCCGa--UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 100903 0.75 0.303168
Target:  5'- -gGCCgUGCCCCGAGGaGCaGCGCgCCUc -3'
miRNA:   3'- gaCGGgAUGGGGCUCC-CGaUGUG-GGA- -5'
13963 3' -61.3 NC_003521.1 + 101033 0.67 0.747127
Target:  5'- -cGCC--ACCgCCGAGGGCgACGCCa- -3'
miRNA:   3'- gaCGGgaUGG-GGCUCCCGaUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 111746 0.7 0.538103
Target:  5'- cCUGCagUACgCCGAGGGuCUGCGCCa- -3'
miRNA:   3'- -GACGggAUGgGGCUCCC-GAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 112448 0.71 0.492137
Target:  5'- -gGCCCaggcgGCCCUGGuGGGC-GCGCCCg -3'
miRNA:   3'- gaCGGGa----UGGGGCU-CCCGaUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 112494 0.66 0.799912
Target:  5'- cCUGUaCCUG-CCCGAGgaccgcGGCUACACCa- -3'
miRNA:   3'- -GACG-GGAUgGGGCUC------CCGAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 112979 0.67 0.747127
Target:  5'- cCUGCCCgacgggcugGCgCCGGGGcccuuccacgaGCUGCGCgCCUg -3'
miRNA:   3'- -GACGGGa--------UGgGGCUCC-----------CGAUGUG-GGA- -5'
13963 3' -61.3 NC_003521.1 + 120540 0.67 0.737972
Target:  5'- -gGCCCUcggcggccggcgGUCCCGGGGGa-GCGCCCg -3'
miRNA:   3'- gaCGGGA------------UGGGGCUCCCgaUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 127715 0.66 0.782777
Target:  5'- -cGCaCCUGgCCCGAGagccGCUccuGCACCCg -3'
miRNA:   3'- gaCG-GGAUgGGGCUCc---CGA---UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 130149 0.74 0.337535
Target:  5'- gCUGCC--GCCaCCGAGcGCUACGCCCUg -3'
miRNA:   3'- -GACGGgaUGG-GGCUCcCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 132725 0.68 0.672023
Target:  5'- aUGCCCaaguCCCCaAGcGCUACAUCCUg -3'
miRNA:   3'- gACGGGau--GGGGcUCcCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 134617 0.7 0.566384
Target:  5'- -aGCCuCUAcauCCCCGAGGGCUucuucggcauCACCUUc -3'
miRNA:   3'- gaCGG-GAU---GGGGCUCCCGAu---------GUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 135175 0.7 0.519519
Target:  5'- -cGCCCacCCCCGAgcuGGGCUucacgcacACGCCCg -3'
miRNA:   3'- gaCGGGauGGGGCU---CCCGA--------UGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.