miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 3' -61.3 NC_003521.1 + 112979 0.67 0.747127
Target:  5'- cCUGCCCgacgggcugGCgCCGGGGcccuuccacgaGCUGCGCgCCUg -3'
miRNA:   3'- -GACGGGa--------UGgGGCUCC-----------CGAUGUG-GGA- -5'
13963 3' -61.3 NC_003521.1 + 29933 0.67 0.737972
Target:  5'- -gGCCUggcacgGCCaCCGAGGcGacgUACACCCUg -3'
miRNA:   3'- gaCGGGa-----UGG-GGCUCC-Cg--AUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 120540 0.67 0.737972
Target:  5'- -gGCCCUcggcggccggcgGUCCCGGGGGa-GCGCCCg -3'
miRNA:   3'- gaCGGGA------------UGGGGCUCCCgaUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 170470 0.67 0.737972
Target:  5'- -gGCUCUACCCCGccGacaaGCUcaACGCCCUg -3'
miRNA:   3'- gaCGGGAUGGGGCucC----CGA--UGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 148704 0.67 0.719423
Target:  5'- -cGCCCgaaccGCaCCCGGGGGUUcCgACCCg -3'
miRNA:   3'- gaCGGGa----UG-GGGCUCCCGAuG-UGGGa -5'
13963 3' -61.3 NC_003521.1 + 59229 0.67 0.719423
Target:  5'- -gGCCCUggacGCCCUGgaggugaacguGGGGCUGCugCg- -3'
miRNA:   3'- gaCGGGA----UGGGGC-----------UCCCGAUGugGga -5'
13963 3' -61.3 NC_003521.1 + 79595 0.67 0.716616
Target:  5'- aCUGCCgCUGCCgCCGccaucgaacuugccGGGGCgaccgcgGCGCCUc -3'
miRNA:   3'- -GACGG-GAUGG-GGC--------------UCCCGa------UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 171532 0.67 0.710046
Target:  5'- -cGCCCUGugUCG-GGGCUGCGCgCUg -3'
miRNA:   3'- gaCGGGAUggGGCuCCCGAUGUGgGA- -5'
13963 3' -61.3 NC_003521.1 + 39599 0.67 0.710046
Target:  5'- -gGUCCUGCCCUGGGuGGCgGCGuCUCg -3'
miRNA:   3'- gaCGGGAUGGGGCUC-CCGaUGU-GGGa -5'
13963 3' -61.3 NC_003521.1 + 59514 0.68 0.691122
Target:  5'- -cGCCCUGgCCCGcGGGCg--GCCUg -3'
miRNA:   3'- gaCGGGAUgGGGCuCCCGaugUGGGa -5'
13963 3' -61.3 NC_003521.1 + 152357 0.68 0.681591
Target:  5'- gCUGCUCUgggGCCggCCG-GGGCggcGCGCCCUc -3'
miRNA:   3'- -GACGGGA---UGG--GGCuCCCGa--UGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 67685 0.68 0.672023
Target:  5'- -aGCCCaagUACgCCGAGGuCUACGCCUc -3'
miRNA:   3'- gaCGGG---AUGgGGCUCCcGAUGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 132725 0.68 0.672023
Target:  5'- aUGCCCaaguCCCCaAGcGCUACAUCCUg -3'
miRNA:   3'- gACGGGau--GGGGcUCcCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 2322 0.68 0.662428
Target:  5'- gCUGCgCgccgGCCuCCuGGGGCUGCugACCCUg -3'
miRNA:   3'- -GACGgGa---UGG-GGcUCCCGAUG--UGGGA- -5'
13963 3' -61.3 NC_003521.1 + 202550 0.68 0.662428
Target:  5'- gCUGCgCgccgGCCuCCuGGGGCUGCugACCCUg -3'
miRNA:   3'- -GACGgGa---UGG-GGcUCCCGAUG--UGGGA- -5'
13963 3' -61.3 NC_003521.1 + 140980 0.68 0.656659
Target:  5'- gCUGCUCUucaacaagcucagcaACCUgGAccuGGGCUGCAUCCUc -3'
miRNA:   3'- -GACGGGA---------------UGGGgCU---CCCGAUGUGGGA- -5'
13963 3' -61.3 NC_003521.1 + 200010 0.68 0.65281
Target:  5'- -gGCCCcGCCCCGAGGcgaauaGCUgaccGCGCCg- -3'
miRNA:   3'- gaCGGGaUGGGGCUCC------CGA----UGUGGga -5'
13963 3' -61.3 NC_003521.1 + 79215 0.68 0.65281
Target:  5'- -aGCaCgUugCCCGAGGGCaccagAUGCCCg -3'
miRNA:   3'- gaCG-GgAugGGGCUCCCGa----UGUGGGa -5'
13963 3' -61.3 NC_003521.1 + 14220 0.68 0.65281
Target:  5'- -aGCCCcugACgCCGcuGGGCUACGCCg- -3'
miRNA:   3'- gaCGGGa--UGgGGCu-CCCGAUGUGGga -5'
13963 3' -61.3 NC_003521.1 + 136134 0.69 0.633538
Target:  5'- -cGCUCUACCCCGuGGcGCgcCGCCa- -3'
miRNA:   3'- gaCGGGAUGGGGCuCC-CGauGUGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.