miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 34570 0.71 0.824732
Target:  5'- cGGGGuGCACCAggcugacgCCgggCugCAGGCGCGc -3'
miRNA:   3'- -CCUCcUGUGGUa-------GGa--GugGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 117991 0.71 0.824732
Target:  5'- cGAGcugcgcGACGCCAUCCacgaGCuCAAGCGCGa -3'
miRNA:   3'- cCUC------CUGUGGUAGGag--UG-GUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 75898 0.7 0.832063
Target:  5'- cGGAGGAgGggcccgguuggUCAUCCUCAUCGucgucgucaucacGGCGCGc -3'
miRNA:   3'- -CCUCCUgU-----------GGUAGGAGUGGU-------------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 141006 0.7 0.832869
Target:  5'- uGGAccuGGGCugCAUCCUCgACCAccaggagggcuGGgGCGa -3'
miRNA:   3'- -CCU---CCUGugGUAGGAG-UGGU-----------UCgCGC- -5'
13963 5' -55.6 NC_003521.1 + 164444 0.7 0.832869
Target:  5'- uGGAGGGCGCCGcgggCCUgAgCAugaagGGCGUGg -3'
miRNA:   3'- -CCUCCUGUGGUa---GGAgUgGU-----UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 16211 0.7 0.832869
Target:  5'- cGAGGuggcgGCGCCcugccgCCUgGCCGAGUGCGa -3'
miRNA:   3'- cCUCC-----UGUGGua----GGAgUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 145659 0.7 0.840046
Target:  5'- uGGuGGGCccggccgGCCGacUCCUUGCCGucGGCGCGg -3'
miRNA:   3'- -CCuCCUG-------UGGU--AGGAGUGGU--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 225277 0.7 0.840834
Target:  5'- aGGuGGGCGCCc-CCUCuuCCcAGCGCGu -3'
miRNA:   3'- -CCuCCUGUGGuaGGAGu-GGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 208038 0.7 0.840835
Target:  5'- uGGAGGGCGCgGgUCuCUCGCCGugaggaAGCGgGa -3'
miRNA:   3'- -CCUCCUGUGgU-AG-GAGUGGU------UCGCgC- -5'
13963 5' -55.6 NC_003521.1 + 61047 0.7 0.848622
Target:  5'- aGGuGGACGCCuccGUCUUCAagaCGGuGCGCGa -3'
miRNA:   3'- -CCuCCUGUGG---UAGGAGUg--GUU-CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 222052 0.7 0.848623
Target:  5'- cGGGGGGCACCAgCCgUCGC--AGCaGCGa -3'
miRNA:   3'- -CCUCCUGUGGUaGG-AGUGguUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 46147 0.7 0.848623
Target:  5'- uGGA-GACgcugACCAUCCUgGCCAucuGCGUGg -3'
miRNA:   3'- -CCUcCUG----UGGUAGGAgUGGUu--CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 28093 0.7 0.848623
Target:  5'- uGGuGGcCACCAUCCUCugCAuGCugguacccugGCGg -3'
miRNA:   3'- -CCuCCuGUGGUAGGAGugGUuCG----------CGC- -5'
13963 5' -55.6 NC_003521.1 + 155410 0.7 0.848623
Target:  5'- gGGGcuGGGCACCGgaggCCUgCugccgGCCAAGCGCa -3'
miRNA:   3'- -CCU--CCUGUGGUa---GGA-G-----UGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 128793 0.7 0.856227
Target:  5'- --cGGugGCgG-CCUcCACCAGGCGCGu -3'
miRNA:   3'- ccuCCugUGgUaGGA-GUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 68339 0.7 0.856227
Target:  5'- cGAGGAUucCUAUCC-CGCCGacGGCGCa -3'
miRNA:   3'- cCUCCUGu-GGUAGGaGUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 26426 0.7 0.856227
Target:  5'- ----aGCGCCAUUCUCACCuGGGCGCu -3'
miRNA:   3'- ccuccUGUGGUAGGAGUGG-UUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 23485 0.7 0.861437
Target:  5'- cGAGGACcggccGCCGUCCgcCACCGugcugacgaucuacAGCGUGg -3'
miRNA:   3'- cCUCCUG-----UGGUAGGa-GUGGU--------------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 36164 0.7 0.86364
Target:  5'- aGGAGGACACCccggacggcGUgcccacgcaCCUgGCCGAGCGg- -3'
miRNA:   3'- -CCUCCUGUGG---------UA---------GGAgUGGUUCGCgc -5'
13963 5' -55.6 NC_003521.1 + 187089 0.7 0.86364
Target:  5'- aGGGGGACgACUA-CCUCcCCuccGCGCGa -3'
miRNA:   3'- -CCUCCUG-UGGUaGGAGuGGuu-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.