Results 21 - 40 of 83 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 152057 | 0.67 | 0.91291 |
Target: 5'- -aCGCGGGGuaucguggacuucUCGGAGGacCACGgCGACGu -3' miRNA: 3'- ggGUGCUCC-------------AGCCUCCa-GUGC-GCUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 104980 | 0.67 | 0.918911 |
Target: 5'- gCCGCGAGacGUCGGAGGagucuucuUCGCuGCuGCAg -3' miRNA: 3'- gGGUGCUC--CAGCCUCC--------AGUG-CGcUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 86269 | 0.67 | 0.918911 |
Target: 5'- gCCgGCGAGGcgaagUUGGGGGUgGCGCccaACAc -3' miRNA: 3'- -GGgUGCUCC-----AGCCUCCAgUGCGc--UGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 202017 | 0.67 | 0.913466 |
Target: 5'- gCCGCGAccaGGUcCGGGGGUC-CgGCGAa- -3' miRNA: 3'- gGGUGCU---CCA-GCCUCCAGuG-CGCUgu -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 225622 | 0.67 | 0.907811 |
Target: 5'- cCCCACGAuGUCGGgauccaccacguAGGUC-UGCGAa- -3' miRNA: 3'- -GGGUGCUcCAGCC------------UCCAGuGCGCUgu -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 238422 | 0.67 | 0.901947 |
Target: 5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3' miRNA: 3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 240572 | 0.67 | 0.901947 |
Target: 5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3' miRNA: 3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 5144 | 0.67 | 0.901349 |
Target: 5'- uUCUuCGGGGUCGGGGGguUCAUagauacgaaagggGCGGCGa -3' miRNA: 3'- -GGGuGCUCCAGCCUCC--AGUG-------------CGCUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 36320 | 0.67 | 0.901947 |
Target: 5'- aCCCucaguCGGGG-CGuGGGGaCAUGCGACu -3' miRNA: 3'- -GGGu----GCUCCaGC-CUCCaGUGCGCUGu -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 53157 | 0.67 | 0.917839 |
Target: 5'- aCCACGucGGGgacggcggcgaGGAGGUCG-GCGACGc -3' miRNA: 3'- gGGUGC--UCCag---------CCUCCAGUgCGCUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 92249 | 0.67 | 0.918911 |
Target: 5'- gCCGCGcGGUCuuuuGGccGGUCGCGuCGACGc -3' miRNA: 3'- gGGUGCuCCAG----CCu-CCAGUGC-GCUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 204226 | 0.67 | 0.889601 |
Target: 5'- gCCCGCccuuggugaucaGGGGcUGGAGGaUCACGgGACu -3' miRNA: 3'- -GGGUG------------CUCCaGCCUCC-AGUGCgCUGu -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 119796 | 0.67 | 0.901947 |
Target: 5'- gCgACGAGGUCggcgccgccgaGGAGGUCuggagcaGCGGCu -3' miRNA: 3'- gGgUGCUCCAG-----------CCUCCAGug-----CGCUGu -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 38194 | 0.67 | 0.901947 |
Target: 5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3' miRNA: 3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 122578 | 0.67 | 0.889601 |
Target: 5'- gUCACGGGGcUCGGuuucucGGUCGC-CGGCGu -3' miRNA: 3'- gGGUGCUCC-AGCCu-----CCAGUGcGCUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 198313 | 0.67 | 0.889601 |
Target: 5'- uCCCugGGGGU-GGGGGaUggGCGGCu -3' miRNA: 3'- -GGGugCUCCAgCCUCCaGugCGCUGu -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 92080 | 0.67 | 0.895876 |
Target: 5'- aCCG-GGGGUCGGGGGgUGCGCagGGCGg -3' miRNA: 3'- gGGUgCUCCAGCCUCCaGUGCG--CUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 103442 | 0.67 | 0.895876 |
Target: 5'- cUCCGCcAGGUCGcGGcGGUUGCGCGcCAc -3' miRNA: 3'- -GGGUGcUCCAGC-CU-CCAGUGCGCuGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 58876 | 0.67 | 0.895876 |
Target: 5'- gCCCACGA-----GAGGUgGCGCGGCGa -3' miRNA: 3'- -GGGUGCUccagcCUCCAgUGCGCUGU- -5' |
|||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 23 | 0.67 | 0.901947 |
Target: 5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3' miRNA: 3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home