miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 210095 1.1 0.003486
Target:  5'- cCCCACGAGGUCGGAGGUCACGCGACAu -3'
miRNA:   3'- -GGGUGCUCCAGCCUCCAGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 68035 0.68 0.876451
Target:  5'- gCCACG-GG-CGGcguGGUC-CGCGGCGc -3'
miRNA:   3'- gGGUGCuCCaGCCu--CCAGuGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 114012 0.68 0.883125
Target:  5'- -aCGCGaAGGUgcUGGAGGUgCGCGCGGa- -3'
miRNA:   3'- ggGUGC-UCCA--GCCUCCA-GUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 132430 0.66 0.942958
Target:  5'- -aCACGGGGUCGGGuuagCGUGCGGCGc -3'
miRNA:   3'- ggGUGCUCCAGCCUcca-GUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 218213 0.7 0.774026
Target:  5'- gUCC-CGGGcaaCGGAGGUCAgGCGACc -3'
miRNA:   3'- -GGGuGCUCca-GCCUCCAGUgCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 18961 0.7 0.790551
Target:  5'- aCCCagcgacaACGAGGa-GGGGGUCgaggacgcgccGCGCGACGa -3'
miRNA:   3'- -GGG-------UGCUCCagCCUCCAG-----------UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 126775 0.69 0.808281
Target:  5'- gCCACGuucaggcuGGUCgaGGAGGagaGCGCGACGg -3'
miRNA:   3'- gGGUGCu-------CCAG--CCUCCag-UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 210291 0.69 0.830151
Target:  5'- gUCUGCGAGGU-GGAGGaCaccauccucaccaaGCGCGACAu -3'
miRNA:   3'- -GGGUGCUCCAgCCUCCaG--------------UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 156471 0.69 0.832511
Target:  5'- aUCCAgGAGG-CGGAGGagGCGCuGAgGg -3'
miRNA:   3'- -GGGUgCUCCaGCCUCCagUGCG-CUgU- -5'
13964 3' -57.9 NC_003521.1 + 103419 0.68 0.869584
Target:  5'- -aCAUGAGGUCGG-GGUUgAUGuCGACGc -3'
miRNA:   3'- ggGUGCUCCAGCCuCCAG-UGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 135639 0.69 0.840273
Target:  5'- uCCCACGAucGG-CGGGGGgcccaGCGuCGGCGg -3'
miRNA:   3'- -GGGUGCU--CCaGCCUCCag---UGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 83959 0.69 0.832511
Target:  5'- aUCAUGAGGugcUCGG-GGUCGgugaccCGCGACAu -3'
miRNA:   3'- gGGUGCUCC---AGCCuCCAGU------GCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 212412 0.76 0.46544
Target:  5'- gCCCAgGuuGUCGGAGGcguugaUCugGCGACAc -3'
miRNA:   3'- -GGGUgCucCAGCCUCC------AGugCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 180561 0.69 0.840273
Target:  5'- cCCCACcAGGUCGuGGGcCACGuCGAUc -3'
miRNA:   3'- -GGGUGcUCCAGCcUCCaGUGC-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 37532 0.72 0.65281
Target:  5'- gUCCugGGGGUgggcagCGGGGGUCGCgGCGGa- -3'
miRNA:   3'- -GGGugCUCCA------GCCUCCAGUG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 87980 0.69 0.832511
Target:  5'- -gCGCGAGGacucggugaaUCuGGGGG-CGCGCGACGc -3'
miRNA:   3'- ggGUGCUCC----------AG-CCUCCaGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 170866 0.68 0.869584
Target:  5'- cUCCGCGGGGgcgggcgCGGGuGGUCAgGCGuCc -3'
miRNA:   3'- -GGGUGCUCCa------GCCU-CCAGUgCGCuGu -5'
13964 3' -57.9 NC_003521.1 + 3976 0.68 0.883125
Target:  5'- aCC-CGGGGcaccgucagcgCGGAGGUCugGCG-CGa -3'
miRNA:   3'- gGGuGCUCCa----------GCCUCCAGugCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 157041 0.71 0.710046
Target:  5'- --gGCGcGGUCGGAGGa-GCGCGGCGg -3'
miRNA:   3'- gggUGCuCCAGCCUCCagUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 49607 0.69 0.808281
Target:  5'- aCCgGCGcuGGGgacgCGGAGGaCACgGCGACGa -3'
miRNA:   3'- -GGgUGC--UCCa---GCCUCCaGUG-CGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.