miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 5' -50.4 NC_003521.1 + 211883 0.66 0.999346
Target:  5'- gGGCGCCGCGcgUGgUAUAGugcGCCa---- -3'
miRNA:   3'- -CCGCGGCGCa-ACaAUAUU---CGGaguac -5'
13964 5' -50.4 NC_003521.1 + 123351 0.66 0.999199
Target:  5'- aGCGCCGCGgccGU----GGCCUCc-- -3'
miRNA:   3'- cCGCGGCGCaa-CAauauUCGGAGuac -5'
13964 5' -50.4 NC_003521.1 + 164448 0.66 0.999199
Target:  5'- gGGCGCCGCG--------GGCCUgagCAUGa -3'
miRNA:   3'- -CCGCGGCGCaacaauauUCGGA---GUAC- -5'
13964 5' -50.4 NC_003521.1 + 25570 0.66 0.999199
Target:  5'- aGGCgGCCGCGggGacagGUGGGCUuguUCAUc -3'
miRNA:   3'- -CCG-CGGCGCaaCaa--UAUUCGG---AGUAc -5'
13964 5' -50.4 NC_003521.1 + 120246 0.66 0.999199
Target:  5'- cGGCgGCCGCGccGUgcaucGCCUCGa- -3'
miRNA:   3'- -CCG-CGGCGCaaCAauauuCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 59175 0.66 0.999199
Target:  5'- cGGCGCCGCGggcagucaggagacGUUAaauauccUGAGUCgCGUGg -3'
miRNA:   3'- -CCGCGGCGCaa------------CAAU-------AUUCGGaGUAC- -5'
13964 5' -50.4 NC_003521.1 + 118921 0.66 0.999199
Target:  5'- cGGCGCCGCGgcGUgggcGGCggCGUc -3'
miRNA:   3'- -CCGCGGCGCaaCAauauUCGgaGUAc -5'
13964 5' -50.4 NC_003521.1 + 111951 0.66 0.999199
Target:  5'- uGGCGCgGCGgcaggAUGAGUCUguUGc -3'
miRNA:   3'- -CCGCGgCGCaacaaUAUUCGGAguAC- -5'
13964 5' -50.4 NC_003521.1 + 219166 0.66 0.999149
Target:  5'- aGGCGCCGCagcgUGUUccaGUGgcggcugagccccaGGCC-CAUGa -3'
miRNA:   3'- -CCGCGGCGca--ACAA---UAU--------------UCGGaGUAC- -5'
13964 5' -50.4 NC_003521.1 + 222121 0.66 0.999024
Target:  5'- aGGCGCUGCGccgGgaagaAUGAGCuCUgAUGa -3'
miRNA:   3'- -CCGCGGCGCaa-Caa---UAUUCG-GAgUAC- -5'
13964 5' -50.4 NC_003521.1 + 149766 0.66 0.999024
Target:  5'- gGGCgGCCGCGcg---GUAcGCCUCAa- -3'
miRNA:   3'- -CCG-CGGCGCaacaaUAUuCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 192061 0.66 0.999024
Target:  5'- cGGCGuCCGCGgcgGUUugugAGGCgUCGg- -3'
miRNA:   3'- -CCGC-GGCGCaa-CAAua--UUCGgAGUac -5'
13964 5' -50.4 NC_003521.1 + 59565 0.66 0.999024
Target:  5'- cGGCGCCGCGg------GGGUUUCGUc -3'
miRNA:   3'- -CCGCGGCGCaacaauaUUCGGAGUAc -5'
13964 5' -50.4 NC_003521.1 + 167180 0.66 0.998817
Target:  5'- aGGCgGCCGCGgcGg---AGGCCUUcUGc -3'
miRNA:   3'- -CCG-CGGCGCaaCaauaUUCGGAGuAC- -5'
13964 5' -50.4 NC_003521.1 + 108513 0.66 0.998794
Target:  5'- aGGCGCaCGCGggagauuUUGUU---GGCCUCcacGUGg -3'
miRNA:   3'- -CCGCG-GCGC-------AACAAuauUCGGAG---UAC- -5'
13964 5' -50.4 NC_003521.1 + 12204 0.66 0.998573
Target:  5'- cGCGCCGCGggGUUcu---CCUCAc- -3'
miRNA:   3'- cCGCGGCGCaaCAAuauucGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 166651 0.66 0.998492
Target:  5'- gGGCGCCGCGgcGcaGcggccagcggcaccUGGGCCcCGUGg -3'
miRNA:   3'- -CCGCGGCGCaaCaaU--------------AUUCGGaGUAC- -5'
13964 5' -50.4 NC_003521.1 + 43387 0.67 0.998289
Target:  5'- uGGCGCCGCc-UGgccauGGCCUCu-- -3'
miRNA:   3'- -CCGCGGCGcaACaauauUCGGAGuac -5'
13964 5' -50.4 NC_003521.1 + 92245 0.67 0.997958
Target:  5'- gGGCGCCGCGcgGUcuuuuGGCCggucgCGUc -3'
miRNA:   3'- -CCGCGGCGCaaCAauau-UCGGa----GUAc -5'
13964 5' -50.4 NC_003521.1 + 73681 0.67 0.997958
Target:  5'- aGGCGCCcaagGCGcUGcucaaGAGCUUCGUGg -3'
miRNA:   3'- -CCGCGG----CGCaACaaua-UUCGGAGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.