miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 121784 0.71 0.618534
Target:  5'- -gGCCacgggcagGUgGCGGUacuUGCGCUCGGCCg -3'
miRNA:   3'- agCGGa-------CGgCGUCA---AUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 85385 0.71 0.618534
Target:  5'- cCGCCU-CacaaGCGGcUGCGCUUGGCCg -3'
miRNA:   3'- aGCGGAcGg---CGUCaAUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 96780 0.71 0.618534
Target:  5'- gUCGCCgccgGCagcaGCGGcgGCGCUCGGgCa -3'
miRNA:   3'- -AGCGGa---CGg---CGUCaaUGCGAGCCgGg -5'
13965 3' -59.4 NC_003521.1 + 149174 0.71 0.628226
Target:  5'- gUGCUcgaUGCCGCGGcgGCGCuccucggcgUCGGCCa -3'
miRNA:   3'- aGCGG---ACGGCGUCaaUGCG---------AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 238952 0.7 0.637921
Target:  5'- gCGCCaGCUGCGGUauuagagGCGC-CGGgCCCc -3'
miRNA:   3'- aGCGGaCGGCGUCAa------UGCGaGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 116780 0.7 0.637921
Target:  5'- cCGCC-GCCGCGGc-ACGCU-GGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 140484 0.7 0.637921
Target:  5'- cCGCCaucaUGCUGCAcg-GCGaCUCGGCCg -3'
miRNA:   3'- aGCGG----ACGGCGUcaaUGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 202363 0.7 0.637921
Target:  5'- gCGCCaGCUGCGGUauuagagGCGC-CGGgCCCc -3'
miRNA:   3'- aGCGGaCGGCGUCAa------UGCGaGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 137157 0.7 0.657291
Target:  5'- cCGCCaugGCCGCGGc--CGCagCGGCCg -3'
miRNA:   3'- aGCGGa--CGGCGUCaauGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 73546 0.7 0.657291
Target:  5'- gCGuCCUGCCGCAGgcagAUGCUgaugaUGGCgCa -3'
miRNA:   3'- aGC-GGACGGCGUCaa--UGCGA-----GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 34791 0.7 0.666953
Target:  5'- gUCGCC-GCuCGC----GCGuCUCGGCCCg -3'
miRNA:   3'- -AGCGGaCG-GCGucaaUGC-GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 74854 0.7 0.666953
Target:  5'- gCGCCgGCCGCGGg-ACGC-CGcGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGaGC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 145249 0.7 0.676589
Target:  5'- gCGgCUGCCuGCAGg-GCGCcuccUCGGCCUc -3'
miRNA:   3'- aGCgGACGG-CGUCaaUGCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 65025 0.7 0.676589
Target:  5'- aUCGCCcggUGCCGCGccGgccgGCGuCUUGGCCa -3'
miRNA:   3'- -AGCGG---ACGGCGU--Caa--UGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 45962 0.7 0.686192
Target:  5'- aUCGUC-GCCGCGGUacggugucCGCUCGGUguCCg -3'
miRNA:   3'- -AGCGGaCGGCGUCAau------GCGAGCCG--GG- -5'
13965 3' -59.4 NC_003521.1 + 43376 0.7 0.686192
Target:  5'- gCGCUcGCCGCA---GCGCUUGGUCa -3'
miRNA:   3'- aGCGGaCGGCGUcaaUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 151228 0.7 0.690023
Target:  5'- cCGCCagcGCCGC-GUcgcgcgacugcacgaUgaucugaccGCGCUCGGCCCa -3'
miRNA:   3'- aGCGGa--CGGCGuCA---------------A---------UGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 144296 0.69 0.695756
Target:  5'- cUCGCugCUGCCGCAc--GCGCUgCGGUUCg -3'
miRNA:   3'- -AGCG--GACGGCGUcaaUGCGA-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 225580 0.69 0.699568
Target:  5'- gUCGuCCUGgCGCucggcggccucGCGCUCGGCCg -3'
miRNA:   3'- -AGC-GGACgGCGucaa-------UGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 148884 0.69 0.705272
Target:  5'- uUCGCCgcccgGCCGCGcgacgaGCGCUgugagGGCCCg -3'
miRNA:   3'- -AGCGGa----CGGCGUcaa---UGCGAg----CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.