Results 41 - 60 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 121784 | 0.71 | 0.618534 |
Target: 5'- -gGCCacgggcagGUgGCGGUacuUGCGCUCGGCCg -3' miRNA: 3'- agCGGa-------CGgCGUCA---AUGCGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 85385 | 0.71 | 0.618534 |
Target: 5'- cCGCCU-CacaaGCGGcUGCGCUUGGCCg -3' miRNA: 3'- aGCGGAcGg---CGUCaAUGCGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 96780 | 0.71 | 0.618534 |
Target: 5'- gUCGCCgccgGCagcaGCGGcgGCGCUCGGgCa -3' miRNA: 3'- -AGCGGa---CGg---CGUCaaUGCGAGCCgGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 149174 | 0.71 | 0.628226 |
Target: 5'- gUGCUcgaUGCCGCGGcgGCGCuccucggcgUCGGCCa -3' miRNA: 3'- aGCGG---ACGGCGUCaaUGCG---------AGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 238952 | 0.7 | 0.637921 |
Target: 5'- gCGCCaGCUGCGGUauuagagGCGC-CGGgCCCc -3' miRNA: 3'- aGCGGaCGGCGUCAa------UGCGaGCC-GGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 116780 | 0.7 | 0.637921 |
Target: 5'- cCGCC-GCCGCGGc-ACGCU-GGCCg -3' miRNA: 3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 140484 | 0.7 | 0.637921 |
Target: 5'- cCGCCaucaUGCUGCAcg-GCGaCUCGGCCg -3' miRNA: 3'- aGCGG----ACGGCGUcaaUGC-GAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 202363 | 0.7 | 0.637921 |
Target: 5'- gCGCCaGCUGCGGUauuagagGCGC-CGGgCCCc -3' miRNA: 3'- aGCGGaCGGCGUCAa------UGCGaGCC-GGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 137157 | 0.7 | 0.657291 |
Target: 5'- cCGCCaugGCCGCGGc--CGCagCGGCCg -3' miRNA: 3'- aGCGGa--CGGCGUCaauGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 73546 | 0.7 | 0.657291 |
Target: 5'- gCGuCCUGCCGCAGgcagAUGCUgaugaUGGCgCa -3' miRNA: 3'- aGC-GGACGGCGUCaa--UGCGA-----GCCGgG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 34791 | 0.7 | 0.666953 |
Target: 5'- gUCGCC-GCuCGC----GCGuCUCGGCCCg -3' miRNA: 3'- -AGCGGaCG-GCGucaaUGC-GAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 74854 | 0.7 | 0.666953 |
Target: 5'- gCGCCgGCCGCGGg-ACGC-CGcGCCg -3' miRNA: 3'- aGCGGaCGGCGUCaaUGCGaGC-CGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 145249 | 0.7 | 0.676589 |
Target: 5'- gCGgCUGCCuGCAGg-GCGCcuccUCGGCCUc -3' miRNA: 3'- aGCgGACGG-CGUCaaUGCG----AGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 65025 | 0.7 | 0.676589 |
Target: 5'- aUCGCCcggUGCCGCGccGgccgGCGuCUUGGCCa -3' miRNA: 3'- -AGCGG---ACGGCGU--Caa--UGC-GAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 45962 | 0.7 | 0.686192 |
Target: 5'- aUCGUC-GCCGCGGUacggugucCGCUCGGUguCCg -3' miRNA: 3'- -AGCGGaCGGCGUCAau------GCGAGCCG--GG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 43376 | 0.7 | 0.686192 |
Target: 5'- gCGCUcGCCGCA---GCGCUUGGUCa -3' miRNA: 3'- aGCGGaCGGCGUcaaUGCGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 151228 | 0.7 | 0.690023 |
Target: 5'- cCGCCagcGCCGC-GUcgcgcgacugcacgaUgaucugaccGCGCUCGGCCCa -3' miRNA: 3'- aGCGGa--CGGCGuCA---------------A---------UGCGAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 144296 | 0.69 | 0.695756 |
Target: 5'- cUCGCugCUGCCGCAc--GCGCUgCGGUUCg -3' miRNA: 3'- -AGCG--GACGGCGUcaaUGCGA-GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 225580 | 0.69 | 0.699568 |
Target: 5'- gUCGuCCUGgCGCucggcggccucGCGCUCGGCCg -3' miRNA: 3'- -AGC-GGACgGCGucaa-------UGCGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 148884 | 0.69 | 0.705272 |
Target: 5'- uUCGCCgcccgGCCGCGcgacgaGCGCUgugagGGCCCg -3' miRNA: 3'- -AGCGGa----CGGCGUcaa---UGCGAg----CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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