miRNA display CGI


Results 41 - 60 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 166781 0.75 0.798789
Target:  5'- uCGGGACaggcgGGGUcgGACGAUGCCGccGCCGCu -3'
miRNA:   3'- -GCCUUGa----CUCG--UUGUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 105858 0.75 0.798789
Target:  5'- ----cCUGAGCGGCuGCGCCGGCgGCg -3'
miRNA:   3'- gccuuGACUCGUUGuUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 43832 0.75 0.816349
Target:  5'- aGGAGCgGuGCuugacGCGGCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGaCuCGu----UGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 116222 0.75 0.816349
Target:  5'- uCGGAcaacgccguACUGAGCcGCAagACGCCccAACCGUa -3'
miRNA:   3'- -GCCU---------UGACUCGuUGU--UGCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 59357 0.75 0.816349
Target:  5'- ---cGCUGcaGGCGGC-GCGCCAGCCGCu -3'
miRNA:   3'- gccuUGAC--UCGUUGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101492 0.75 0.816349
Target:  5'- aGGuGCUcGAGCAGCGGCGgCCAGaCGCg -3'
miRNA:   3'- gCCuUGA-CUCGUUGUUGC-GGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 191885 0.74 0.822342
Target:  5'- --cAACUGGGCGGCGGCGCCAcguccuucacggacACCGg -3'
miRNA:   3'- gccUUGACUCGUUGUUGCGGU--------------UGGCg -5'
13965 5' -51.8 NC_003521.1 + 138116 0.74 0.824885
Target:  5'- uCGGGGCUcuGGCGggGCGGC-CCAGCCGCg -3'
miRNA:   3'- -GCCUUGAc-UCGU--UGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 127053 0.74 0.824885
Target:  5'- gCGGAGCUGGaccacGC-GCAGCGCCAggGCCuGCc -3'
miRNA:   3'- -GCCUUGACU-----CGuUGUUGCGGU--UGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 226370 0.74 0.833247
Target:  5'- gGGAGC--GGCGGCuGACGCC-GCCGCa -3'
miRNA:   3'- gCCUUGacUCGUUG-UUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 128619 0.74 0.840618
Target:  5'- uCGGGGCUGAGCAcgaaguuGCcguagguggccGGCGCCGacACCGUc -3'
miRNA:   3'- -GCCUUGACUCGU-------UG-----------UUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 148415 0.74 0.841428
Target:  5'- gGGAGCcauggugcGGGCGGCcGCGCCGGCgGCu -3'
miRNA:   3'- gCCUUGa-------CUCGUUGuUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 197847 0.74 0.841428
Target:  5'- gGGAaggGC-GAGUAGCAGCGCCAGCUcccgaGCu -3'
miRNA:   3'- gCCU---UGaCUCGUUGUUGCGGUUGG-----CG- -5'
13965 5' -51.8 NC_003521.1 + 153837 0.74 0.841428
Target:  5'- aGGuggugGAGCGGCuguGCGCCGugCGCg -3'
miRNA:   3'- gCCuuga-CUCGUUGu--UGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 116824 0.74 0.848629
Target:  5'- gGGuGCUGcAGCGguuuccagaccugACGGcCGCCGACCGCg -3'
miRNA:   3'- gCCuUGAC-UCGU-------------UGUU-GCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 91523 0.74 0.84942
Target:  5'- uGGAGgUGGGCGG-AGCGUCGACCGg -3'
miRNA:   3'- gCCUUgACUCGUUgUUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 30997 0.74 0.84942
Target:  5'- uCGGGAUgGGGCGACGacgGCGCCGGCgaggaCGCg -3'
miRNA:   3'- -GCCUUGaCUCGUUGU---UGCGGUUG-----GCG- -5'
13965 5' -51.8 NC_003521.1 + 101787 0.74 0.84942
Target:  5'- aCGGAGCUGcAGCGccuGCug-GUCGGCCGCg -3'
miRNA:   3'- -GCCUUGAC-UCGU---UGuugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196789 0.74 0.84942
Target:  5'- gGGAGCUGGGCGgguuGCuGugGCC-GCUGCg -3'
miRNA:   3'- gCCUUGACUCGU----UG-UugCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 70867 0.74 0.84942
Target:  5'- aGGAGgaGAGCAACGACGaCAuAUCGCc -3'
miRNA:   3'- gCCUUgaCUCGUUGUUGCgGU-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.