miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 139624 0.66 0.992611
Target:  5'- -cGCucuuCGCCAGCugcUACaaCACGAACGu -3'
miRNA:   3'- gaCGu---GCGGUCGu--AUGcaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 240424 0.66 0.992611
Target:  5'- -cGUACGCUcaGGCcgACGcCAUGAGCc -3'
miRNA:   3'- gaCGUGCGG--UCGuaUGCaGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 112052 0.66 0.995177
Target:  5'- aCUGCgACGCCuGCuggaggACGcCGCGGugGg -3'
miRNA:   3'- -GACG-UGCGGuCGua----UGCaGUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 207056 0.66 0.995177
Target:  5'- -cGCAgGCCGGag-GCGUUGCaGGGCAg -3'
miRNA:   3'- gaCGUgCGGUCguaUGCAGUG-CUUGU- -5'
13967 3' -52.5 NC_003521.1 + 160778 0.66 0.992611
Target:  5'- gUGC-CGCCGGCGgcacGCGggCGCGggUc -3'
miRNA:   3'- gACGuGCGGUCGUa---UGCa-GUGCuuGu -5'
13967 3' -52.5 NC_003521.1 + 103124 0.66 0.995177
Target:  5'- -cGCACGgcCCAGaCcUACGcCACGGGCGc -3'
miRNA:   3'- gaCGUGC--GGUC-GuAUGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 104317 0.66 0.994418
Target:  5'- gUGCugGCgCAGacgGCGUCG-GAGCAc -3'
miRNA:   3'- gACGugCG-GUCguaUGCAGUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 220276 0.66 0.995177
Target:  5'- uUGCugGggugcucguugcCCAGCGUAUagGcCACGAACAu -3'
miRNA:   3'- gACGugC------------GGUCGUAUG--CaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 204436 0.66 0.993565
Target:  5'- gCUGC-CGCCAGCAg----CACGGAa- -3'
miRNA:   3'- -GACGuGCGGUCGUaugcaGUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 192960 0.66 0.995177
Target:  5'- gCUGCcCuCCAGCAUGC-UCGCGAc-- -3'
miRNA:   3'- -GACGuGcGGUCGUAUGcAGUGCUugu -5'
13967 3' -52.5 NC_003521.1 + 30648 0.66 0.992611
Target:  5'- -gGCGCGCCuGCu--CGUCAUGGc-- -3'
miRNA:   3'- gaCGUGCGGuCGuauGCAGUGCUugu -5'
13967 3' -52.5 NC_003521.1 + 43562 0.66 0.995177
Target:  5'- -cGC-CGCCGGCGccGCGUCAagcaccgcuccuCGGGCGg -3'
miRNA:   3'- gaCGuGCGGUCGUa-UGCAGU------------GCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 143803 0.66 0.992611
Target:  5'- gCUGCucguCGCCGGCG-GCG-CGCGuGCGg -3'
miRNA:   3'- -GACGu---GCGGUCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 44777 0.66 0.991548
Target:  5'- aUGCugGCCAuGCA-GCG-CAUGGGCc -3'
miRNA:   3'- gACGugCGGU-CGUaUGCaGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 111171 0.66 0.992611
Target:  5'- -aGCGCGgccgccCCGGCGacgGCGcCGCGGACGg -3'
miRNA:   3'- gaCGUGC------GGUCGUa--UGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 204552 0.66 0.993565
Target:  5'- -cGguCGUCGGCAUGCcgGUCAuguCGAGCGc -3'
miRNA:   3'- gaCguGCGGUCGUAUG--CAGU---GCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 150913 0.66 0.994337
Target:  5'- aCUGCGCGCCcuuccacGGCGUGUGggcCGAGCGc -3'
miRNA:   3'- -GACGUGCGG-------UCGUAUGCaguGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 234113 0.66 0.995177
Target:  5'- cCUGCACcacggcgagacCCAGCA-GCGcUCGCGGGCGc -3'
miRNA:   3'- -GACGUGc----------GGUCGUaUGC-AGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 129917 0.66 0.994418
Target:  5'- -cGCGCGCCuGCug----CGCGAACAc -3'
miRNA:   3'- gaCGUGCGGuCGuaugcaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 192291 0.66 0.991322
Target:  5'- -cGCACGCCGGCGgugcagaaccugACGaCgAUGAACGg -3'
miRNA:   3'- gaCGUGCGGUCGUa-----------UGCaG-UGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.