miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 235166 0.66 0.994418
Target:  5'- -aGCGCGaUUGGCGUcGCGUCAUGGugGa -3'
miRNA:   3'- gaCGUGC-GGUCGUA-UGCAGUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 26551 0.66 0.995177
Target:  5'- -cGCuuuAUGCCAGCGacgGCGUCA-GGGCGa -3'
miRNA:   3'- gaCG---UGCGGUCGUa--UGCAGUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 111171 0.66 0.992611
Target:  5'- -aGCGCGgccgccCCGGCGacgGCGcCGCGGACGg -3'
miRNA:   3'- gaCGUGC------GGUCGUa--UGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 204436 0.66 0.993565
Target:  5'- gCUGC-CGCCAGCAg----CACGGAa- -3'
miRNA:   3'- -GACGuGCGGUCGUaugcaGUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 123518 0.66 0.992611
Target:  5'- gCUGC-CGCCcGCAauccGCGUCGCuucGAACGu -3'
miRNA:   3'- -GACGuGCGGuCGUa---UGCAGUG---CUUGU- -5'
13967 3' -52.5 NC_003521.1 + 150913 0.66 0.994337
Target:  5'- aCUGCGCGCCcuuccacGGCGUGUGggcCGAGCGc -3'
miRNA:   3'- -GACGUGCGG-------UCGUAUGCaguGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 130476 0.66 0.994418
Target:  5'- gUGCugGcCCAGC-UACacCGCGAGCGc -3'
miRNA:   3'- gACGugC-GGUCGuAUGcaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 57509 0.66 0.993565
Target:  5'- -gGCGCGCaCGGCGcUGa-UCACGGGCGa -3'
miRNA:   3'- gaCGUGCG-GUCGU-AUgcAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 154144 0.66 0.995177
Target:  5'- -cGCGCGCUGGacgACGaggaUCugGAGCAg -3'
miRNA:   3'- gaCGUGCGGUCguaUGC----AGugCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 160778 0.66 0.992611
Target:  5'- gUGC-CGCCGGCGgcacGCGggCGCGggUc -3'
miRNA:   3'- gACGuGCGGUCGUa---UGCa-GUGCuuGu -5'
13967 3' -52.5 NC_003521.1 + 220975 0.66 0.991548
Target:  5'- -aGCGCuG-CAGCuccACGUCGCGGGCGa -3'
miRNA:   3'- gaCGUG-CgGUCGua-UGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 84679 0.66 0.994418
Target:  5'- -aGCAgCGCCAGCAgcUGCGUgCACa---- -3'
miRNA:   3'- gaCGU-GCGGUCGU--AUGCA-GUGcuugu -5'
13967 3' -52.5 NC_003521.1 + 219449 0.66 0.991548
Target:  5'- -cGCACagcucgGUCAGC-UGCGgCACGAGCGa -3'
miRNA:   3'- gaCGUG------CGGUCGuAUGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 35763 0.66 0.991548
Target:  5'- gCUGgACGCuccaCAGCGUGCGcagACGGACGa -3'
miRNA:   3'- -GACgUGCG----GUCGUAUGCag-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 200891 0.66 0.992611
Target:  5'- -cGUACGCUcaGGCcgACGcCAUGAGCc -3'
miRNA:   3'- gaCGUGCGG--UCGuaUGCaGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 220626 0.66 0.993383
Target:  5'- -aGCGCGCgAGUucccgacgaugACGUCGCGAcGCGg -3'
miRNA:   3'- gaCGUGCGgUCGua---------UGCAGUGCU-UGU- -5'
13967 3' -52.5 NC_003521.1 + 30648 0.66 0.992611
Target:  5'- -gGCGCGCCuGCu--CGUCAUGGc-- -3'
miRNA:   3'- gaCGUGCGGuCGuauGCAGUGCUugu -5'
13967 3' -52.5 NC_003521.1 + 150263 0.66 0.994418
Target:  5'- cCUGCACcgcgGCCGGCcucucguggGUGCuGUCGCGGGg- -3'
miRNA:   3'- -GACGUG----CGGUCG---------UAUG-CAGUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 66662 0.66 0.991548
Target:  5'- gUGCGCgGCCuGCAggcccuggaGCGUCACGuGCu -3'
miRNA:   3'- gACGUG-CGGuCGUa--------UGCAGUGCuUGu -5'
13967 3' -52.5 NC_003521.1 + 192960 0.66 0.995177
Target:  5'- gCUGCcCuCCAGCAUGC-UCGCGAc-- -3'
miRNA:   3'- -GACGuGcGGUCGUAUGcAGUGCUugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.