miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 109591 0.69 0.953143
Target:  5'- -aGUGCGCCAGCu--CGgccaGCGAGCAc -3'
miRNA:   3'- gaCGUGCGGUCGuauGCag--UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 128934 0.72 0.895112
Target:  5'- -gGCGCGCCAGCGUgGCGUUcuccaccaGCGucuGCAc -3'
miRNA:   3'- gaCGUGCGGUCGUA-UGCAG--------UGCu--UGU- -5'
13967 3' -52.5 NC_003521.1 + 192033 0.71 0.901566
Target:  5'- uCUGCAcCGCCGGCGUGCGcgGCaGACGc -3'
miRNA:   3'- -GACGU-GCGGUCGUAUGCagUGcUUGU- -5'
13967 3' -52.5 NC_003521.1 + 112786 0.71 0.907177
Target:  5'- cCUGCugGCCgccuacgGGCAcGCGcUCugGGACGg -3'
miRNA:   3'- -GACGugCGG-------UCGUaUGC-AGugCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 224094 0.71 0.925041
Target:  5'- -cGCGCGCCGGCG---GUCGcCGAACu -3'
miRNA:   3'- gaCGUGCGGUCGUaugCAGU-GCUUGu -5'
13967 3' -52.5 NC_003521.1 + 74220 0.7 0.930316
Target:  5'- uCUGcCACGuCCuGCGacagguggGCGUCACGGGCAu -3'
miRNA:   3'- -GAC-GUGC-GGuCGUa-------UGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 145291 0.7 0.935353
Target:  5'- -cGCGCGCCGGCGU-C-UCGcCGGGCAu -3'
miRNA:   3'- gaCGUGCGGUCGUAuGcAGU-GCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 238350 0.7 0.940152
Target:  5'- -aGCugGCCGGCGc-CGUCGCGuACc -3'
miRNA:   3'- gaCGugCGGUCGUauGCAGUGCuUGu -5'
13967 3' -52.5 NC_003521.1 + 119785 0.69 0.952744
Target:  5'- gCUGCgguccaccuuccgGCGCCAGCGggGCGaCACGGugGu -3'
miRNA:   3'- -GACG-------------UGCGGUCGUa-UGCaGUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 78139 0.72 0.874391
Target:  5'- -gGCGCGUUAGCGgcgGCGgcCGCGAACGa -3'
miRNA:   3'- gaCGUGCGGUCGUa--UGCa-GUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 59367 0.72 0.867046
Target:  5'- -gGCGCGCCAGCcgcuggACGcCGCGcAGCAc -3'
miRNA:   3'- gaCGUGCGGUCGua----UGCaGUGC-UUGU- -5'
13967 3' -52.5 NC_003521.1 + 128498 0.73 0.818772
Target:  5'- gUGCGCGCCGGCcUGCGacagcgagUCGCuGGGCAg -3'
miRNA:   3'- gACGUGCGGUCGuAUGC--------AGUG-CUUGU- -5'
13967 3' -52.5 NC_003521.1 + 71517 0.77 0.614476
Target:  5'- gCUGCgaccgACGCCGGCcgACGUCACcGAGCc -3'
miRNA:   3'- -GACG-----UGCGGUCGuaUGCAGUG-CUUGu -5'
13967 3' -52.5 NC_003521.1 + 169362 0.76 0.675674
Target:  5'- -gGCGCGCCAGCAUGuaaGUCACGuagaugagGACGa -3'
miRNA:   3'- gaCGUGCGGUCGUAUg--CAGUGC--------UUGU- -5'
13967 3' -52.5 NC_003521.1 + 66571 0.76 0.705906
Target:  5'- -gGCGCGCCAGCGcaacgUGCGUC-UGAGCu -3'
miRNA:   3'- gaCGUGCGGUCGU-----AUGCAGuGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 124535 0.75 0.725765
Target:  5'- gCUGUccuccaGCGCCAGCuugcgcacGUACGUCACGAuCAg -3'
miRNA:   3'- -GACG------UGCGGUCG--------UAUGCAGUGCUuGU- -5'
13967 3' -52.5 NC_003521.1 + 52564 0.75 0.735578
Target:  5'- -cGCagACGCCGGCAgaagACGUCgcGCGGGCAg -3'
miRNA:   3'- gaCG--UGCGGUCGUa---UGCAG--UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 200420 0.75 0.754926
Target:  5'- cCUGCACGCCcgcGGCAaGCGaCACGcGCAa -3'
miRNA:   3'- -GACGUGCGG---UCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 77958 0.74 0.792255
Target:  5'- -cGCGCGCCccugcGCGUugGcCACGAACu -3'
miRNA:   3'- gaCGUGCGGu----CGUAugCaGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 222098 0.73 0.818772
Target:  5'- cCUGCAgCGCCGGCA-GCGUCuCGAGg- -3'
miRNA:   3'- -GACGU-GCGGUCGUaUGCAGuGCUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.