miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 31674 1.09 0.009175
Target:  5'- gCUGCACGCCAGCAUACGUCACGAACAa -3'
miRNA:   3'- -GACGUGCGGUCGUAUGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 73761 0.78 0.573832
Target:  5'- aUGUggGCCGGCAccgGCGUCAUGAGCGc -3'
miRNA:   3'- gACGugCGGUCGUa--UGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 71517 0.77 0.614476
Target:  5'- gCUGCgaccgACGCCGGCcgACGUCACcGAGCc -3'
miRNA:   3'- -GACG-----UGCGGUCGuaUGCAGUG-CUUGu -5'
13967 3' -52.5 NC_003521.1 + 136502 0.77 0.624688
Target:  5'- -aGCG-GCCGGCGUGCGUCAUGAGg- -3'
miRNA:   3'- gaCGUgCGGUCGUAUGCAGUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 169362 0.76 0.675674
Target:  5'- -gGCGCGCCAGCAUGuaaGUCACGuagaugagGACGa -3'
miRNA:   3'- gaCGUGCGGUCGUAUg--CAGUGC--------UUGU- -5'
13967 3' -52.5 NC_003521.1 + 137074 0.76 0.685798
Target:  5'- -cGCACGCCGGgGU-CGUCgGCGGGCAg -3'
miRNA:   3'- gaCGUGCGGUCgUAuGCAG-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 69437 0.76 0.695879
Target:  5'- -aGCGCGCCgcGGCGgGCGUCGgGAGCGu -3'
miRNA:   3'- gaCGUGCGG--UCGUaUGCAGUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 66571 0.76 0.705906
Target:  5'- -gGCGCGCCAGCGcaacgUGCGUC-UGAGCu -3'
miRNA:   3'- gaCGUGCGGUCGU-----AUGCAGuGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 124535 0.75 0.725765
Target:  5'- gCUGUccuccaGCGCCAGCuugcgcacGUACGUCACGAuCAg -3'
miRNA:   3'- -GACG------UGCGGUCG--------UAUGCAGUGCUuGU- -5'
13967 3' -52.5 NC_003521.1 + 52564 0.75 0.735578
Target:  5'- -cGCagACGCCGGCAgaagACGUCgcGCGGGCAg -3'
miRNA:   3'- gaCG--UGCGGUCGUa---UGCAG--UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 240896 0.75 0.754926
Target:  5'- cCUGCACGCCcgcGGCAaGCGaCACGcGCAa -3'
miRNA:   3'- -GACGUGCGG---UCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 200420 0.75 0.754926
Target:  5'- cCUGCACGCCcgcGGCAaGCGaCACGcGCAa -3'
miRNA:   3'- -GACGUGCGG---UCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 347 0.75 0.754926
Target:  5'- cCUGCACGCCcgcGGCAaGCGaCACGcGCAa -3'
miRNA:   3'- -GACGUGCGG---UCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 77958 0.74 0.792255
Target:  5'- -cGCGCGCCccugcGCGUugGcCACGAACu -3'
miRNA:   3'- gaCGUGCGGu----CGUAugCaGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 222098 0.73 0.818772
Target:  5'- cCUGCAgCGCCGGCA-GCGUCuCGAGg- -3'
miRNA:   3'- -GACGU-GCGGUCGUaUGCAGuGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 128498 0.73 0.818772
Target:  5'- gUGCGCGCCGGCcUGCGacagcgagUCGCuGGGCAg -3'
miRNA:   3'- gACGUGCGGUCGuAUGC--------AGUG-CUUGU- -5'
13967 3' -52.5 NC_003521.1 + 149239 0.73 0.83562
Target:  5'- gUGCGCGCCAGCAcGCGg-AUGAugGc -3'
miRNA:   3'- gACGUGCGGUCGUaUGCagUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 124414 0.73 0.83562
Target:  5'- cCUGCACGgCAGCGgcgGCGgaggcagcggCGCGGGCGg -3'
miRNA:   3'- -GACGUGCgGUCGUa--UGCa---------GUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 195206 0.73 0.84377
Target:  5'- -cGCuaGCGCCGGCGUccaagACGaCGCGAGCAc -3'
miRNA:   3'- gaCG--UGCGGUCGUA-----UGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 224998 0.73 0.84377
Target:  5'- -cGCugGCC-GCcUGCGUCgGCGAGCAc -3'
miRNA:   3'- gaCGugCGGuCGuAUGCAG-UGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.