miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 347 0.75 0.754926
Target:  5'- cCUGCACGCCcgcGGCAaGCGaCACGcGCAa -3'
miRNA:   3'- -GACGUGCGG---UCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 17393 0.68 0.982413
Target:  5'- -aGCGCGCCGGCAggaucgACGaccUCGcCGggUAc -3'
miRNA:   3'- gaCGUGCGGUCGUa-----UGC---AGU-GCuuGU- -5'
13967 3' -52.5 NC_003521.1 + 22592 0.67 0.989061
Target:  5'- cCUGgACGCCAuGUucuuccucaACGUCACGGAUg -3'
miRNA:   3'- -GACgUGCGGU-CGua-------UGCAGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 23052 0.69 0.967298
Target:  5'- -cGCGCGgaUAGC-UACGUCACGAGgAg -3'
miRNA:   3'- gaCGUGCg-GUCGuAUGCAGUGCUUgU- -5'
13967 3' -52.5 NC_003521.1 + 26551 0.66 0.995177
Target:  5'- -cGCuuuAUGCCAGCGacgGCGUCA-GGGCGa -3'
miRNA:   3'- gaCG---UGCGGUCGUa--UGCAGUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 30648 0.66 0.992611
Target:  5'- -gGCGCGCCuGCu--CGUCAUGGc-- -3'
miRNA:   3'- gaCGUGCGGuCGuauGCAGUGCUugu -5'
13967 3' -52.5 NC_003521.1 + 31370 0.68 0.97001
Target:  5'- gCUGCACGUcgccggaCAGCAUGCGUaCACa---- -3'
miRNA:   3'- -GACGUGCG-------GUCGUAUGCA-GUGcuugu -5'
13967 3' -52.5 NC_003521.1 + 31674 1.09 0.009175
Target:  5'- gCUGCACGCCAGCAUACGUCACGAACAa -3'
miRNA:   3'- -GACGUGCGGUCGUAUGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 33091 0.7 0.940152
Target:  5'- uUGCgACGUCAGCgaGUACGUCuuuuCGGACc -3'
miRNA:   3'- gACG-UGCGGUCG--UAUGCAGu---GCUUGu -5'
13967 3' -52.5 NC_003521.1 + 33152 0.7 0.949045
Target:  5'- -gGCACGgCGGCAgcaccgGCGgCGCGGGCGc -3'
miRNA:   3'- gaCGUGCgGUCGUa-----UGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 34477 0.68 0.982413
Target:  5'- -cGCAgGCCAGCAgcucGCGgaaGCaGAGCAg -3'
miRNA:   3'- gaCGUgCGGUCGUa---UGCag-UG-CUUGU- -5'
13967 3' -52.5 NC_003521.1 + 34696 0.67 0.987621
Target:  5'- cCUGCGCGUCguaggcgaagacGGCGccgugcGCGUCcACGAACAc -3'
miRNA:   3'- -GACGUGCGG------------UCGUa-----UGCAG-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 34847 0.67 0.988923
Target:  5'- -cGCGCGCCuGCAgcccgGCGUCAgccuggugcacccCGAccACAa -3'
miRNA:   3'- gaCGUGCGGuCGUa----UGCAGU-------------GCU--UGU- -5'
13967 3' -52.5 NC_003521.1 + 35763 0.66 0.991548
Target:  5'- gCUGgACGCuccaCAGCGUGCGcagACGGACGa -3'
miRNA:   3'- -GACgUGCG----GUCGUAUGCag-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 40751 0.68 0.973102
Target:  5'- gCUGCgGCGCCguGGC--GCGcCGCGGACAc -3'
miRNA:   3'- -GACG-UGCGG--UCGuaUGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 42817 0.68 0.970302
Target:  5'- -cGgACaGCCAGCcggGCGUCGCGGAgGa -3'
miRNA:   3'- gaCgUG-CGGUCGua-UGCAGUGCUUgU- -5'
13967 3' -52.5 NC_003521.1 + 43231 0.66 0.993565
Target:  5'- gUGgGCGCCGGCGggucGCGcUCGCuGGGCu -3'
miRNA:   3'- gACgUGCGGUCGUa---UGC-AGUG-CUUGu -5'
13967 3' -52.5 NC_003521.1 + 43493 0.66 0.992611
Target:  5'- -aGCGCGCCcaauguGCG-GCGUCugGuGCAg -3'
miRNA:   3'- gaCGUGCGGu-----CGUaUGCAGugCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 43562 0.66 0.995177
Target:  5'- -cGC-CGCCGGCGccGCGUCAagcaccgcuccuCGGGCGg -3'
miRNA:   3'- gaCGuGCGGUCGUa-UGCAGU------------GCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 44522 0.68 0.978122
Target:  5'- gCUGCAUgGCCAGCAUcaaGCGgcccggCACGcGCu -3'
miRNA:   3'- -GACGUG-CGGUCGUA---UGCa-----GUGCuUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.