miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 44777 0.66 0.991548
Target:  5'- aUGCugGCCAuGCA-GCG-CAUGGGCc -3'
miRNA:   3'- gACGugCGGU-CGUaUGCaGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 46342 0.69 0.960659
Target:  5'- uCUGCgACGCCGG---GCGUCGCGAc-- -3'
miRNA:   3'- -GACG-UGCGGUCguaUGCAGUGCUugu -5'
13967 3' -52.5 NC_003521.1 + 48611 0.68 0.980355
Target:  5'- gUGCAcCGUCAGCAcgcacGCGgauagcagCGCGAGCAg -3'
miRNA:   3'- gACGU-GCGGUCGUa----UGCa-------GUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 49452 0.68 0.978122
Target:  5'- gCUGCGgGCCAauucGCuaauCGUCACGGAUc -3'
miRNA:   3'- -GACGUgCGGU----CGuau-GCAGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 52564 0.75 0.735578
Target:  5'- -cGCagACGCCGGCAgaagACGUCgcGCGGGCAg -3'
miRNA:   3'- gaCG--UGCGGUCGUa---UGCAG--UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 55978 0.68 0.975707
Target:  5'- gCUGCGCGCCGaCAUGCuGgagCACGGGa- -3'
miRNA:   3'- -GACGUGCGGUcGUAUG-Ca--GUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 56288 0.68 0.977888
Target:  5'- -cGCAgGCCAGCAUcgaguacuugaccACGUgAUGGAUg -3'
miRNA:   3'- gaCGUgCGGUCGUA-------------UGCAgUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 57509 0.66 0.993565
Target:  5'- -gGCGCGCaCGGCGcUGa-UCACGGGCGa -3'
miRNA:   3'- gaCGUGCG-GUCGU-AUgcAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 58788 0.69 0.953143
Target:  5'- -cGCGCGCCGGCGacgACGcauagacggUCuCGAGCAg -3'
miRNA:   3'- gaCGUGCGGUCGUa--UGC---------AGuGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 59098 0.68 0.980355
Target:  5'- -cGcUugGCCAGCGUGCG-CGCGucCAu -3'
miRNA:   3'- gaC-GugCGGUCGUAUGCaGUGCuuGU- -5'
13967 3' -52.5 NC_003521.1 + 59110 0.71 0.901566
Target:  5'- cCUGCugggcauccGCGCCAGUA-ACGUCACGGcCGc -3'
miRNA:   3'- -GACG---------UGCGGUCGUaUGCAGUGCUuGU- -5'
13967 3' -52.5 NC_003521.1 + 59367 0.72 0.867046
Target:  5'- -gGCGCGCCAGCcgcuggACGcCGCGcAGCAc -3'
miRNA:   3'- gaCGUGCGGUCGua----UGCaGUGC-UUGU- -5'
13967 3' -52.5 NC_003521.1 + 59914 0.71 0.925041
Target:  5'- -gGCGCGCCAGCGUcugccgcaccaACGcCuGCGAGCc -3'
miRNA:   3'- gaCGUGCGGUCGUA-----------UGCaG-UGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 60259 0.68 0.973371
Target:  5'- gCUGCAggcugccggugaagaGCCGGUAgcugACGUCGCGGAUu -3'
miRNA:   3'- -GACGUg--------------CGGUCGUa---UGCAGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 61411 0.69 0.964086
Target:  5'- aCUGCucaGCGaCAGCAUGCGgcaccugaGCGAGCGg -3'
miRNA:   3'- -GACG---UGCgGUCGUAUGCag------UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 61694 0.67 0.983755
Target:  5'- cCUGCAgccgcucgcucaggUGCC-GCAUGCuGUCGCuGAGCAg -3'
miRNA:   3'- -GACGU--------------GCGGuCGUAUG-CAGUG-CUUGU- -5'
13967 3' -52.5 NC_003521.1 + 63343 0.68 0.975707
Target:  5'- -aGCGCGCCGGCgcagcuGUACGgggUCGCGGuCGu -3'
miRNA:   3'- gaCGUGCGGUCG------UAUGC---AGUGCUuGU- -5'
13967 3' -52.5 NC_003521.1 + 64793 0.72 0.888429
Target:  5'- -cGgGCGUCGGCGU-CGUCGCGcAACAu -3'
miRNA:   3'- gaCgUGCGGUCGUAuGCAGUGC-UUGU- -5'
13967 3' -52.5 NC_003521.1 + 65017 0.69 0.953143
Target:  5'- gUGcCGCGCCGGCcgGCGUCuuGGccACGg -3'
miRNA:   3'- gAC-GUGCGGUCGuaUGCAGugCU--UGU- -5'
13967 3' -52.5 NC_003521.1 + 65889 0.67 0.989061
Target:  5'- -cGCGCGUCAGCu--CcUCGCGGGCc -3'
miRNA:   3'- gaCGUGCGGUCGuauGcAGUGCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.