miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 240896 0.75 0.754926
Target:  5'- cCUGCACGCCcgcGGCAaGCGaCACGcGCAa -3'
miRNA:   3'- -GACGUGCGG---UCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 240424 0.66 0.992611
Target:  5'- -cGUACGCUcaGGCcgACGcCAUGAGCc -3'
miRNA:   3'- gaCGUGCGG--UCGuaUGCaGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 239522 0.68 0.98161
Target:  5'- -cGCcgGCGCCguAGCGgaaccauucgucgGCGUCGCGGGCGg -3'
miRNA:   3'- gaCG--UGCGG--UCGUa------------UGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 238350 0.7 0.940152
Target:  5'- -aGCugGCCGGCGc-CGUCGCGuACc -3'
miRNA:   3'- gaCGugCGGUCGUauGCAGUGCuUGu -5'
13967 3' -52.5 NC_003521.1 + 238219 0.67 0.986038
Target:  5'- cCUGgGCGUCGGCAcgGCGU--CGAGCGu -3'
miRNA:   3'- -GACgUGCGGUCGUa-UGCAguGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 235166 0.66 0.994418
Target:  5'- -aGCGCGaUUGGCGUcGCGUCAUGGugGa -3'
miRNA:   3'- gaCGUGC-GGUCGUA-UGCAGUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 234113 0.66 0.995177
Target:  5'- cCUGCACcacggcgagacCCAGCA-GCGcUCGCGGGCGc -3'
miRNA:   3'- -GACGUGc----------GGUCGUaUGC-AGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 232420 0.68 0.978122
Target:  5'- -gGCaACGCCAGCGccUGCGUguCGGAg- -3'
miRNA:   3'- gaCG-UGCGGUCGU--AUGCAguGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 226366 0.69 0.956636
Target:  5'- gUGCACGCCguGGUAUcuguuggGCGUgACGGGCc -3'
miRNA:   3'- gACGUGCGG--UCGUA-------UGCAgUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 224998 0.73 0.84377
Target:  5'- -cGCugGCC-GCcUGCGUCgGCGAGCAc -3'
miRNA:   3'- gaCGugCGGuCGuAUGCAG-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 224869 0.68 0.975707
Target:  5'- -aGCGCGCCAGCu--CGUCcaggugcuugGCGcACAg -3'
miRNA:   3'- gaCGUGCGGUCGuauGCAG----------UGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 224094 0.71 0.925041
Target:  5'- -cGCGCGCCGGCG---GUCGcCGAACu -3'
miRNA:   3'- gaCGUGCGGUCGUaugCAGU-GCUUGu -5'
13967 3' -52.5 NC_003521.1 + 223468 0.68 0.982413
Target:  5'- -gGC-CGCCGcGCcgGCGUCACGGc-- -3'
miRNA:   3'- gaCGuGCGGU-CGuaUGCAGUGCUugu -5'
13967 3' -52.5 NC_003521.1 + 222098 0.73 0.818772
Target:  5'- cCUGCAgCGCCGGCA-GCGUCuCGAGg- -3'
miRNA:   3'- -GACGU-GCGGUCGUaUGCAGuGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 220975 0.66 0.991548
Target:  5'- -aGCGCuG-CAGCuccACGUCGCGGGCGa -3'
miRNA:   3'- gaCGUG-CgGUCGua-UGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 220626 0.66 0.993383
Target:  5'- -aGCGCGCgAGUucccgacgaugACGUCGCGAcGCGg -3'
miRNA:   3'- gaCGUGCGgUCGua---------UGCAGUGCU-UGU- -5'
13967 3' -52.5 NC_003521.1 + 220528 0.67 0.989061
Target:  5'- -aGCACcCCAGCA-ACGUgACGGugAu -3'
miRNA:   3'- gaCGUGcGGUCGUaUGCAgUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 220276 0.66 0.995177
Target:  5'- uUGCugGggugcucguugcCCAGCGUAUagGcCACGAACAu -3'
miRNA:   3'- gACGugC------------GGUCGUAUG--CaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 220239 0.68 0.970302
Target:  5'- gCUGUugGCCAGCAg--GUagAUGAACAu -3'
miRNA:   3'- -GACGugCGGUCGUaugCAg-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 220102 0.68 0.973102
Target:  5'- aUGCAcCGCCAGCGgUACGggUCGCGucCGc -3'
miRNA:   3'- gACGU-GCGGUCGU-AUGC--AGUGCuuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.