miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 31674 1.09 0.009175
Target:  5'- gCUGCACGCCAGCAUACGUCACGAACAa -3'
miRNA:   3'- -GACGUGCGGUCGUAUGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 72473 0.71 0.907789
Target:  5'- -aGUGCGCCu-CGUGCaGUCACGGGCAg -3'
miRNA:   3'- gaCGUGCGGucGUAUG-CAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 109825 0.7 0.935353
Target:  5'- -cGCAUGCUAGCcgACGaccacCACGAAUAc -3'
miRNA:   3'- gaCGUGCGGUCGuaUGCa----GUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 154144 0.66 0.995177
Target:  5'- -cGCGCGCUGGacgACGaggaUCugGAGCAg -3'
miRNA:   3'- gaCGUGCGGUCguaUGC----AGugCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 240896 0.75 0.754926
Target:  5'- cCUGCACGCCcgcGGCAaGCGaCACGcGCAa -3'
miRNA:   3'- -GACGUGCGG---UCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 347 0.75 0.754926
Target:  5'- cCUGCACGCCcgcGGCAaGCGaCACGcGCAa -3'
miRNA:   3'- -GACGUGCGG---UCGUaUGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 124414 0.73 0.83562
Target:  5'- cCUGCACGgCAGCGgcgGCGgaggcagcggCGCGGGCGg -3'
miRNA:   3'- -GACGUGCgGUCGUa--UGCa---------GUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 195206 0.73 0.84377
Target:  5'- -cGCuaGCGCCGGCGUccaagACGaCGCGAGCAc -3'
miRNA:   3'- gaCG--UGCGGUCGUA-----UGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 155569 0.72 0.88152
Target:  5'- gCUGCACcUCGGCGUGCGagAgGAACAg -3'
miRNA:   3'- -GACGUGcGGUCGUAUGCagUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 59110 0.71 0.901566
Target:  5'- cCUGCugggcauccGCGCCAGUA-ACGUCACGGcCGc -3'
miRNA:   3'- -GACG---------UGCGGUCGUaUGCAGUGCUuGU- -5'
13967 3' -52.5 NC_003521.1 + 72258 0.72 0.895112
Target:  5'- gCUGgGCcCCAGCGagcugcGCGUCACGGACGc -3'
miRNA:   3'- -GACgUGcGGUCGUa-----UGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 138289 0.72 0.867046
Target:  5'- -cGUGCGCCGGCAgcgACG-CACGcGCAc -3'
miRNA:   3'- gaCGUGCGGUCGUa--UGCaGUGCuUGU- -5'
13967 3' -52.5 NC_003521.1 + 136502 0.77 0.624688
Target:  5'- -aGCG-GCCGGCGUGCGUCAUGAGg- -3'
miRNA:   3'- gaCGUgCGGUCGUAUGCAGUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 135738 0.72 0.895112
Target:  5'- gUGCGCGCCAcuGCGUccGCGUCgACGGGgGg -3'
miRNA:   3'- gACGUGCGGU--CGUA--UGCAG-UGCUUgU- -5'
13967 3' -52.5 NC_003521.1 + 137074 0.76 0.685798
Target:  5'- -cGCACGCCGGgGU-CGUCgGCGGGCAg -3'
miRNA:   3'- gaCGUGCGGUCgUAuGCAG-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 224998 0.73 0.84377
Target:  5'- -cGCugGCC-GCcUGCGUCgGCGAGCAc -3'
miRNA:   3'- gaCGugCGGuCGuAUGCAG-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 151230 0.71 0.901566
Target:  5'- -gGC-CGCCAGCGccGCGUCGCGcGACu -3'
miRNA:   3'- gaCGuGCGGUCGUa-UGCAGUGC-UUGu -5'
13967 3' -52.5 NC_003521.1 + 59914 0.71 0.925041
Target:  5'- -gGCGCGCCAGCGUcugccgcaccaACGcCuGCGAGCc -3'
miRNA:   3'- gaCGUGCGGUCGUA-----------UGCaG-UGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 69437 0.76 0.695879
Target:  5'- -aGCGCGCCgcGGCGgGCGUCGgGAGCGu -3'
miRNA:   3'- gaCGUGCGG--UCGUaUGCAGUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 149239 0.73 0.83562
Target:  5'- gUGCGCGCCAGCAcGCGg-AUGAugGc -3'
miRNA:   3'- gACGUGCGGUCGUaUGCagUGCUugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.