Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13967 | 5' | -55.3 | NC_003521.1 | + | 129623 | 0.67 | 0.94879 |
Target: 5'- aGU-CGCcgGCcGcCCGGCGG-GUGCu -3' miRNA: 3'- aCAuGCGuaCGaCaGGCCGCUgCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 42296 | 0.67 | 0.94879 |
Target: 5'- gGUAgcagcUGCGUGgUG-CCGGCGGCGUc- -3' miRNA: 3'- aCAU-----GCGUACgACaGGCCGCUGCAcg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 85586 | 0.67 | 0.944561 |
Target: 5'- gGgcCGCGggccaagGCUGgagcgaCGGCGACGUGg -3' miRNA: 3'- aCauGCGUa------CGACag----GCCGCUGCACg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 59850 | 0.67 | 0.940109 |
Target: 5'- --cACGCAcuauggGCcgGUCaaCGGCGAUGUGCc -3' miRNA: 3'- acaUGCGUa-----CGa-CAG--GCCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 201252 | 0.67 | 0.940109 |
Target: 5'- --gGCGCcUGCUuggccUCCGGCGugGgGCu -3' miRNA: 3'- acaUGCGuACGAc----AGGCCGCugCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 240063 | 0.67 | 0.940109 |
Target: 5'- --gGCGCcUGCUuggccUCCGGCGugGgGCu -3' miRNA: 3'- acaUGCGuACGAc----AGGCCGCugCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 147975 | 0.67 | 0.940109 |
Target: 5'- cGUGCGCAcgggucacauggUGCUGgCCGuguuCGugGUGUa -3' miRNA: 3'- aCAUGCGU------------ACGACaGGCc---GCugCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 115382 | 0.68 | 0.935433 |
Target: 5'- gUGgagACGCcgGCgGUCacgacgggggCGGCGACG-GCg -3' miRNA: 3'- -ACa--UGCGuaCGaCAG----------GCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 201533 | 0.68 | 0.935433 |
Target: 5'- gGUucCGCuacgGCg--CCGGCGACGUGg -3' miRNA: 3'- aCAu-GCGua--CGacaGGCCGCUGCACg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 45787 | 0.68 | 0.935433 |
Target: 5'- --gGCGCccGCUccaaGUCCaugcggcucgacGGCGACGUGUa -3' miRNA: 3'- acaUGCGuaCGA----CAGG------------CCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 239783 | 0.68 | 0.935433 |
Target: 5'- gGUucCGCuacgGCg--CCGGCGACGUGg -3' miRNA: 3'- aCAu-GCGua--CGacaGGCCGCUGCACg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 167006 | 0.68 | 0.935433 |
Target: 5'- aGUugGCGUagaagguccgGUUG-CCGGCGACGaUGa -3' miRNA: 3'- aCAugCGUA----------CGACaGGCCGCUGC-ACg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 118029 | 0.68 | 0.930532 |
Target: 5'- --cAUGC-UGCUGggaCGGCGGCG-GCg -3' miRNA: 3'- acaUGCGuACGACag-GCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 228736 | 0.68 | 0.930532 |
Target: 5'- gGgcUGCGUGgUGagCaGCGGCGUGCg -3' miRNA: 3'- aCauGCGUACgACagGcCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 216606 | 0.68 | 0.925404 |
Target: 5'- --aGCGCGUGCUGgaucuaCUGGCGcuACGaGCg -3' miRNA: 3'- acaUGCGUACGACa-----GGCCGC--UGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 239369 | 0.68 | 0.925404 |
Target: 5'- aUGccCGUGUGCUGccaCCGGCGGCGcaGCu -3' miRNA: 3'- -ACauGCGUACGACa--GGCCGCUGCa-CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 201947 | 0.68 | 0.925404 |
Target: 5'- aUGccCGUGUGCUGccaCCGGCGGCGcaGCu -3' miRNA: 3'- -ACauGCGUACGACa--GGCCGCUGCa-CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 233604 | 0.68 | 0.925404 |
Target: 5'- --gGCGcCAUGaucUCCGGCGGgGUGCu -3' miRNA: 3'- acaUGC-GUACgacAGGCCGCUgCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 138911 | 0.68 | 0.925404 |
Target: 5'- aGUACGCcgGCucggUGUCggaccaCGGCGGC-UGCu -3' miRNA: 3'- aCAUGCGuaCG----ACAG------GCCGCUGcACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 32097 | 0.68 | 0.920051 |
Target: 5'- --aGCGcCAUGC-GUuuGGCGGCGcgGCu -3' miRNA: 3'- acaUGC-GUACGaCAggCCGCUGCa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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