miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 103576 0.7 0.869255
Target:  5'- cGUcaGCGCcUGCUGgaguaCCGGCG-CGUGg -3'
miRNA:   3'- aCA--UGCGuACGACa----GGCCGCuGCACg -5'
13967 5' -55.3 NC_003521.1 + 223837 0.7 0.869255
Target:  5'- --gGCGCcUGCUGUCCcuGCGGC-UGCu -3'
miRNA:   3'- acaUGCGuACGACAGGc-CGCUGcACG- -5'
13967 5' -55.3 NC_003521.1 + 56922 0.7 0.869255
Target:  5'- gGUGCGCGaGCgggagGUgcaCCGGCccGugGUGCg -3'
miRNA:   3'- aCAUGCGUaCGa----CA---GGCCG--CugCACG- -5'
13967 5' -55.3 NC_003521.1 + 76604 0.7 0.872119
Target:  5'- gGUGCGCAagacggccUGCgaGUUCGucaagggcgugacgcGCGACGUGCu -3'
miRNA:   3'- aCAUGCGU--------ACGa-CAGGC---------------CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 66046 0.69 0.876353
Target:  5'- cGgcCGaa-GUUGUCCGGCGGCGgUGUg -3'
miRNA:   3'- aCauGCguaCGACAGGCCGCUGC-ACG- -5'
13967 5' -55.3 NC_003521.1 + 17363 0.69 0.876353
Target:  5'- gGUACGacgGCggGUCCGGUGGCGg-- -3'
miRNA:   3'- aCAUGCguaCGa-CAGGCCGCUGCacg -5'
13967 5' -55.3 NC_003521.1 + 31717 0.69 0.876353
Target:  5'- aUGUGCGCGUGCUGggacgCC-GCGGCcaccGCc -3'
miRNA:   3'- -ACAUGCGUACGACa----GGcCGCUGca--CG- -5'
13967 5' -55.3 NC_003521.1 + 80755 0.69 0.883245
Target:  5'- aUGUccaGCGCGaucaUGCUGUCgaccgUGGCGAUaGUGCu -3'
miRNA:   3'- -ACA---UGCGU----ACGACAG-----GCCGCUG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 43891 0.69 0.883245
Target:  5'- --cACGCuaccgGUGCUG-CCGGUGACGacGCg -3'
miRNA:   3'- acaUGCG-----UACGACaGGCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 76976 0.69 0.883245
Target:  5'- -aUGCGCGugaUGCUGg-CGGCGAUGgGCa -3'
miRNA:   3'- acAUGCGU---ACGACagGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 211668 0.69 0.887943
Target:  5'- aUGUGCGCcgGCUGcugcacgagagCCGGCGccugacggccuacuACGUGa -3'
miRNA:   3'- -ACAUGCGuaCGACa----------GGCCGC--------------UGCACg -5'
13967 5' -55.3 NC_003521.1 + 187579 0.69 0.889925
Target:  5'- gGUGCGC-UGUUGUCCGacGCGGCc-GCu -3'
miRNA:   3'- aCAUGCGuACGACAGGC--CGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 49889 0.69 0.889925
Target:  5'- cGUG-GCGUGC-GUgUGGCGACG-GCa -3'
miRNA:   3'- aCAUgCGUACGaCAgGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 150694 0.69 0.889925
Target:  5'- cUGggUGC-UGCUGcgCCGGCGGCGacugGCu -3'
miRNA:   3'- -ACauGCGuACGACa-GGCCGCUGCa---CG- -5'
13967 5' -55.3 NC_003521.1 + 224679 0.69 0.896391
Target:  5'- --cACGCAgcgcCUGgCCGGCGAgGUGUa -3'
miRNA:   3'- acaUGCGUac--GACaGGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 42558 0.69 0.896391
Target:  5'- --gACGCccggcugGCUGUCCGGCGGCc--- -3'
miRNA:   3'- acaUGCGua-----CGACAGGCCGCUGcacg -5'
13967 5' -55.3 NC_003521.1 + 153366 0.69 0.90264
Target:  5'- cGU-CGCGcGCgc-CCGGCGGCGUGg -3'
miRNA:   3'- aCAuGCGUaCGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 75519 0.69 0.904471
Target:  5'- aUGUGCagccggcccuccucgGCGUGCaugaagggcacgaUGUCgugguUGGCGGCGUGCa -3'
miRNA:   3'- -ACAUG---------------CGUACG-------------ACAG-----GCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 44248 0.69 0.906882
Target:  5'- cGUGCGCG-GgaGUCCGGCgucacgccggaggaGaucaGCGUGCa -3'
miRNA:   3'- aCAUGCGUaCgaCAGGCCG--------------C----UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 154735 0.69 0.908074
Target:  5'- --gGCGCcgGCgGUgCCGGUGaccaacaGCGUGCg -3'
miRNA:   3'- acaUGCGuaCGaCA-GGCCGC-------UGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.