miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 85586 0.67 0.944561
Target:  5'- gGgcCGCGggccaagGCUGgagcgaCGGCGACGUGg -3'
miRNA:   3'- aCauGCGUa------CGACag----GCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 85940 0.7 0.846774
Target:  5'- --gGCGCGUGCUGgacgCCGGCucggaacagcuGGCGgccGCg -3'
miRNA:   3'- acaUGCGUACGACa---GGCCG-----------CUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 89110 0.77 0.516849
Target:  5'- --cACGCccGUGCUGUgcuacgaCGGCGGCGUGCu -3'
miRNA:   3'- acaUGCG--UACGACAg------GCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 90901 0.66 0.975035
Target:  5'- -cUGCGCAUGCg--UCGGCGuCgGUGUu -3'
miRNA:   3'- acAUGCGUACGacaGGCCGCuG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 90954 0.66 0.977439
Target:  5'- -cUGCGCAUGCgauuuuugUCGGCGugGUu- -3'
miRNA:   3'- acAUGCGUACGaca-----GGCCGCugCAcg -5'
13967 5' -55.3 NC_003521.1 + 91430 0.66 0.966709
Target:  5'- cGUGCGCAUGCgc-CUGGgGGCuuucuaUGCg -3'
miRNA:   3'- aCAUGCGUACGacaGGCCgCUGc-----ACG- -5'
13967 5' -55.3 NC_003521.1 + 97049 0.71 0.797023
Target:  5'- cGUaGCGCcgccgcUGCUG-CCGGCGGCGacgGCg -3'
miRNA:   3'- aCA-UGCGu-----ACGACaGGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 102654 0.69 0.908667
Target:  5'- cGUGaaGCG-GCUGUCgGGC-ACGUGCu -3'
miRNA:   3'- aCAUg-CGUaCGACAGgCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 103576 0.7 0.869255
Target:  5'- cGUcaGCGCcUGCUGgaguaCCGGCG-CGUGg -3'
miRNA:   3'- aCA--UGCGuACGACa----GGCCGCuGCACg -5'
13967 5' -55.3 NC_003521.1 + 105862 0.71 0.830855
Target:  5'- --aGCGCcugagcgGCUGcgCCGGCGGCG-GCg -3'
miRNA:   3'- acaUGCGua-----CGACa-GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 105887 0.66 0.966709
Target:  5'- --gGCGCAga-UG-CCGGgGGCGUGUa -3'
miRNA:   3'- acaUGCGUacgACaGGCCgCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 108942 0.72 0.760939
Target:  5'- aGUGCGCG-GCUGU-CGGUGGCGUc- -3'
miRNA:   3'- aCAUGCGUaCGACAgGCCGCUGCAcg -5'
13967 5' -55.3 NC_003521.1 + 111171 0.66 0.969676
Target:  5'- --aGCGCG-GCcGccCCGGCGACG-GCg -3'
miRNA:   3'- acaUGCGUaCGaCa-GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 111996 0.72 0.760939
Target:  5'- cGUACuGCAgGCUG-UgGGUGGCGUGCc -3'
miRNA:   3'- aCAUG-CGUaCGACaGgCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 115363 0.7 0.846774
Target:  5'- gGUcACGCGUcGCUGgccagggCCGGC-AUGUGCa -3'
miRNA:   3'- aCA-UGCGUA-CGACa------GGCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 115382 0.68 0.935433
Target:  5'- gUGgagACGCcgGCgGUCacgacgggggCGGCGACG-GCg -3'
miRNA:   3'- -ACa--UGCGuaCGaCAG----------GCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 116089 0.7 0.846774
Target:  5'- aGUGCaGCG-GCUGUCCGcGCGACa--- -3'
miRNA:   3'- aCAUG-CGUaCGACAGGC-CGCUGcacg -5'
13967 5' -55.3 NC_003521.1 + 116375 0.66 0.966709
Target:  5'- --aGCuGC-UGCUG-CCGcGCGACGUGg -3'
miRNA:   3'- acaUG-CGuACGACaGGC-CGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 117927 0.66 0.977439
Target:  5'- gGUGCuGC-UGCUGaggUGGCGGCGgcgGCg -3'
miRNA:   3'- aCAUG-CGuACGACag-GCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 118029 0.68 0.930532
Target:  5'- --cAUGC-UGCUGggaCGGCGGCG-GCg -3'
miRNA:   3'- acaUGCGuACGACag-GCCGCUGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.