miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 56346 0.75 0.614621
Target:  5'- -cUGCGCGUGCUGcgcgagCUGGUGACGgagGCc -3'
miRNA:   3'- acAUGCGUACGACa-----GGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 56922 0.7 0.869255
Target:  5'- gGUGCGCGaGCgggagGUgcaCCGGCccGugGUGCg -3'
miRNA:   3'- aCAUGCGUaCGa----CA---GGCCG--CugCACG- -5'
13967 5' -55.3 NC_003521.1 + 59714 0.66 0.974532
Target:  5'- uUGU-CGUAgaccucgagcucGCUG-CCGGCGGCG-GCg -3'
miRNA:   3'- -ACAuGCGUa-----------CGACaGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 59850 0.67 0.940109
Target:  5'- --cACGCAcuauggGCcgGUCaaCGGCGAUGUGCc -3'
miRNA:   3'- acaUGCGUa-----CGa-CAG--GCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 61785 0.66 0.966709
Target:  5'- ---cCGCcgGC--UCCGGCGugGaUGCg -3'
miRNA:   3'- acauGCGuaCGacAGGCCGCugC-ACG- -5'
13967 5' -55.3 NC_003521.1 + 62835 0.66 0.966402
Target:  5'- gGUAgGCGgcggcguUGCUG-CauuGCGACGUGCg -3'
miRNA:   3'- aCAUgCGU-------ACGACaGgc-CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 63897 0.71 0.788193
Target:  5'- -uUGCGCGUGCgguacuucUCCaGGCGGCGcUGCa -3'
miRNA:   3'- acAUGCGUACGac------AGG-CCGCUGC-ACG- -5'
13967 5' -55.3 NC_003521.1 + 65347 0.72 0.770143
Target:  5'- aGUGCauGCAggacgUGCUGUCCGGggaGACG-GCg -3'
miRNA:   3'- aCAUG--CGU-----ACGACAGGCCg--CUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 65855 0.71 0.788193
Target:  5'- cUGU-UGCAgcuguUGCUGUCCcuGGCGguaGCGUGCg -3'
miRNA:   3'- -ACAuGCGU-----ACGACAGG--CCGC---UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 66046 0.69 0.876353
Target:  5'- cGgcCGaa-GUUGUCCGGCGGCGgUGUg -3'
miRNA:   3'- aCauGCguaCGACAGGCCGCUGC-ACG- -5'
13967 5' -55.3 NC_003521.1 + 68134 0.66 0.977439
Target:  5'- cGUACGagcaGUGCUGguaucaGGCGcAgGUGCu -3'
miRNA:   3'- aCAUGCg---UACGACagg---CCGC-UgCACG- -5'
13967 5' -55.3 NC_003521.1 + 68802 0.67 0.956593
Target:  5'- aGUugGCGgccGCUgccgccGUCCGGUGuCGgugGCg -3'
miRNA:   3'- aCAugCGUa--CGA------CAGGCCGCuGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 73179 0.67 0.960172
Target:  5'- cUGgACGCGgaGCUGgCCGGCaucGACGUGa -3'
miRNA:   3'- -ACaUGCGUa-CGACaGGCCG---CUGCACg -5'
13967 5' -55.3 NC_003521.1 + 74544 0.66 0.969676
Target:  5'- -aUGCGgAUGUUG-CCGGCGcAC-UGCg -3'
miRNA:   3'- acAUGCgUACGACaGGCCGC-UGcACG- -5'
13967 5' -55.3 NC_003521.1 + 75519 0.69 0.904471
Target:  5'- aUGUGCagccggcccuccucgGCGUGCaugaagggcacgaUGUCgugguUGGCGGCGUGCa -3'
miRNA:   3'- -ACAUG---------------CGUACG-------------ACAG-----GCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 76604 0.7 0.872119
Target:  5'- gGUGCGCAagacggccUGCgaGUUCGucaagggcgugacgcGCGACGUGCu -3'
miRNA:   3'- aCAUGCGU--------ACGa-CAGGC---------------CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 76976 0.69 0.883245
Target:  5'- -aUGCGCGugaUGCUGg-CGGCGAUGgGCa -3'
miRNA:   3'- acAUGCGU---ACGACagGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 80755 0.69 0.883245
Target:  5'- aUGUccaGCGCGaucaUGCUGUCgaccgUGGCGAUaGUGCu -3'
miRNA:   3'- -ACA---UGCGU----ACGACAG-----GCCGCUG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 82912 0.75 0.624572
Target:  5'- -cUGCGUuagcuUGCUGcggacgcccuccUCCGGCGGCGUGUa -3'
miRNA:   3'- acAUGCGu----ACGAC------------AGGCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 85499 0.68 0.920051
Target:  5'- uUGcGCGCcgGCcccaugucucUGUCCGGCG-CG-GCg -3'
miRNA:   3'- -ACaUGCGuaCG----------ACAGGCCGCuGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.