miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 129987 0.71 0.814252
Target:  5'- cGU-CGCugccGCUGcgCCGGCGGCG-GCg -3'
miRNA:   3'- aCAuGCGua--CGACa-GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 149618 0.71 0.814252
Target:  5'- -aUGCGCGaaacggcGCUGgacgccgCCGGCGAgGUGCu -3'
miRNA:   3'- acAUGCGUa------CGACa------GGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 137483 0.71 0.820137
Target:  5'- --gGCGCcgGCgUGUCgCGGCGccgcgaggucugggACGUGCa -3'
miRNA:   3'- acaUGCGuaCG-ACAG-GCCGC--------------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 190629 0.71 0.820137
Target:  5'- --gACGUcggaggagacggagAUGCUGcCCGGCG-CGUGCc -3'
miRNA:   3'- acaUGCG--------------UACGACaGGCCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 233484 0.71 0.822635
Target:  5'- --gACGCAaGCUGUaCGGUGGCG-GCg -3'
miRNA:   3'- acaUGCGUaCGACAgGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 133645 0.71 0.822635
Target:  5'- --aGCGCGgaccgccgcGCUGUgCCGGCGGacCGUGCu -3'
miRNA:   3'- acaUGCGUa--------CGACA-GGCCGCU--GCACG- -5'
13967 5' -55.3 NC_003521.1 + 105862 0.71 0.830855
Target:  5'- --aGCGCcugagcgGCUGcgCCGGCGGCG-GCg -3'
miRNA:   3'- acaUGCGua-----CGACa-GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 135740 0.7 0.838903
Target:  5'- aUGUGCGCGccacUGC-GUCCGcGuCGACGggggGCg -3'
miRNA:   3'- -ACAUGCGU----ACGaCAGGC-C-GCUGCa---CG- -5'
13967 5' -55.3 NC_003521.1 + 239466 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 155496 0.7 0.838903
Target:  5'- gGgcCGCAcgaaGCgGUCCacguaGGCGACGUGCu -3'
miRNA:   3'- aCauGCGUa---CGaCAGG-----CCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 201849 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 138453 0.7 0.845995
Target:  5'- --cGCGCGUGCaucgCCGGCGGCGccacaucUGCc -3'
miRNA:   3'- acaUGCGUACGaca-GGCCGCUGC-------ACG- -5'
13967 5' -55.3 NC_003521.1 + 160773 0.7 0.846774
Target:  5'- --cGCGCGUGCcG-CCGGCGGCacGCg -3'
miRNA:   3'- acaUGCGUACGaCaGGCCGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 85940 0.7 0.846774
Target:  5'- --gGCGCGUGCUGgacgCCGGCucggaacagcuGGCGgccGCg -3'
miRNA:   3'- acaUGCGUACGACa---GGCCG-----------CUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 116089 0.7 0.846774
Target:  5'- aGUGCaGCG-GCUGUCCGcGCGACa--- -3'
miRNA:   3'- aCAUG-CGUaCGACAGGC-CGCUGcacg -5'
13967 5' -55.3 NC_003521.1 + 191256 0.7 0.846774
Target:  5'- aGUGCGcCGUGCagacggccGUCCaGGUGGCgGUGCa -3'
miRNA:   3'- aCAUGC-GUACGa-------CAGG-CCGCUG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 115363 0.7 0.846774
Target:  5'- gGUcACGCGUcGCUGgccagggCCGGC-AUGUGCa -3'
miRNA:   3'- aCA-UGCGUA-CGACa------GGCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 207175 0.7 0.849871
Target:  5'- gGUcaACGCggugaucuucacaugGUGCUG-CUGuGCGGCGUGCg -3'
miRNA:   3'- aCA--UGCG---------------UACGACaGGC-CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 118743 0.7 0.85446
Target:  5'- gGgcUGCAgguUGCUGgugagUCGGCGGcCGUGCg -3'
miRNA:   3'- aCauGCGU---ACGACa----GGCCGCU-GCACG- -5'
13967 5' -55.3 NC_003521.1 + 220334 0.7 0.868534
Target:  5'- gUGUACGCgcugcugGUGCUGUCCuuccuGGCGuuG-GCg -3'
miRNA:   3'- -ACAUGCG-------UACGACAGG-----CCGCugCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.