Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13967 | 5' | -55.3 | NC_003521.1 | + | 150559 | 0.71 | 0.814252 |
Target: 5'- gGUGCGgGUGgUGg-CGGCGGCGgcgGCg -3' miRNA: 3'- aCAUGCgUACgACagGCCGCUGCa--CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 129987 | 0.71 | 0.814252 |
Target: 5'- cGU-CGCugccGCUGcgCCGGCGGCG-GCg -3' miRNA: 3'- aCAuGCGua--CGACa-GGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 137483 | 0.71 | 0.820137 |
Target: 5'- --gGCGCcgGCgUGUCgCGGCGccgcgaggucugggACGUGCa -3' miRNA: 3'- acaUGCGuaCG-ACAG-GCCGC--------------UGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 190629 | 0.71 | 0.820137 |
Target: 5'- --gACGUcggaggagacggagAUGCUGcCCGGCG-CGUGCc -3' miRNA: 3'- acaUGCG--------------UACGACaGGCCGCuGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 133645 | 0.71 | 0.822635 |
Target: 5'- --aGCGCGgaccgccgcGCUGUgCCGGCGGacCGUGCu -3' miRNA: 3'- acaUGCGUa--------CGACA-GGCCGCU--GCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 233484 | 0.71 | 0.822635 |
Target: 5'- --gACGCAaGCUGUaCGGUGGCG-GCg -3' miRNA: 3'- acaUGCGUaCGACAgGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 105862 | 0.71 | 0.830855 |
Target: 5'- --aGCGCcugagcgGCUGcgCCGGCGGCG-GCg -3' miRNA: 3'- acaUGCGua-----CGACa-GGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 239466 | 0.7 | 0.838903 |
Target: 5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3' miRNA: 3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 201849 | 0.7 | 0.838903 |
Target: 5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3' miRNA: 3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 135740 | 0.7 | 0.838903 |
Target: 5'- aUGUGCGCGccacUGC-GUCCGcGuCGACGggggGCg -3' miRNA: 3'- -ACAUGCGU----ACGaCAGGC-C-GCUGCa---CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 155496 | 0.7 | 0.838903 |
Target: 5'- gGgcCGCAcgaaGCgGUCCacguaGGCGACGUGCu -3' miRNA: 3'- aCauGCGUa---CGaCAGG-----CCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 138453 | 0.7 | 0.845995 |
Target: 5'- --cGCGCGUGCaucgCCGGCGGCGccacaucUGCc -3' miRNA: 3'- acaUGCGUACGaca-GGCCGCUGC-------ACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 85940 | 0.7 | 0.846774 |
Target: 5'- --gGCGCGUGCUGgacgCCGGCucggaacagcuGGCGgccGCg -3' miRNA: 3'- acaUGCGUACGACa---GGCCG-----------CUGCa--CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 191256 | 0.7 | 0.846774 |
Target: 5'- aGUGCGcCGUGCagacggccGUCCaGGUGGCgGUGCa -3' miRNA: 3'- aCAUGC-GUACGa-------CAGG-CCGCUG-CACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 160773 | 0.7 | 0.846774 |
Target: 5'- --cGCGCGUGCcG-CCGGCGGCacGCg -3' miRNA: 3'- acaUGCGUACGaCaGGCCGCUGcaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 116089 | 0.7 | 0.846774 |
Target: 5'- aGUGCaGCG-GCUGUCCGcGCGACa--- -3' miRNA: 3'- aCAUG-CGUaCGACAGGC-CGCUGcacg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 115363 | 0.7 | 0.846774 |
Target: 5'- gGUcACGCGUcGCUGgccagggCCGGC-AUGUGCa -3' miRNA: 3'- aCA-UGCGUA-CGACa------GGCCGcUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 207175 | 0.7 | 0.849871 |
Target: 5'- gGUcaACGCggugaucuucacaugGUGCUG-CUGuGCGGCGUGCg -3' miRNA: 3'- aCA--UGCG---------------UACGACaGGC-CGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 118743 | 0.7 | 0.85446 |
Target: 5'- gGgcUGCAgguUGCUGgugagUCGGCGGcCGUGCg -3' miRNA: 3'- aCauGCGU---ACGACa----GGCCGCU-GCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 220334 | 0.7 | 0.868534 |
Target: 5'- gUGUACGCgcugcugGUGCUGUCCuuccuGGCGuuG-GCg -3' miRNA: 3'- -ACAUGCG-------UACGACAGG-----CCGCugCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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