miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 29013 0.66 0.977439
Target:  5'- cGgugGCGCGgcccGCgcgcGUCUGGUugucGGCGUGCg -3'
miRNA:   3'- aCa--UGCGUa---CGa---CAGGCCG----CUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 137960 0.66 0.963543
Target:  5'- --aGCGCGUGUgguaugCCGaCGugGUGCg -3'
miRNA:   3'- acaUGCGUACGaca---GGCcGCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 116375 0.66 0.966709
Target:  5'- --aGCuGC-UGCUG-CCGcGCGACGUGg -3'
miRNA:   3'- acaUG-CGuACGACaGGC-CGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 91430 0.66 0.966709
Target:  5'- cGUGCGCAUGCgc-CUGGgGGCuuucuaUGCg -3'
miRNA:   3'- aCAUGCGUACGacaGGCCgCUGc-----ACG- -5'
13967 5' -55.3 NC_003521.1 + 151792 0.66 0.966709
Target:  5'- gGUACaGCAUGaaGguggCCGGC-ACGUGUu -3'
miRNA:   3'- aCAUG-CGUACgaCa---GGCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 33260 0.66 0.966709
Target:  5'- --cGCGCA-GCaGgCCGGCGcgauCGUGCa -3'
miRNA:   3'- acaUGCGUaCGaCaGGCCGCu---GCACG- -5'
13967 5' -55.3 NC_003521.1 + 105887 0.66 0.966709
Target:  5'- --gGCGCAga-UG-CCGGgGGCGUGUa -3'
miRNA:   3'- acaUGCGUacgACaGGCCgCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 61785 0.66 0.966709
Target:  5'- ---cCGCcgGC--UCCGGCGugGaUGCg -3'
miRNA:   3'- acauGCGuaCGacAGGCCGCugC-ACG- -5'
13967 5' -55.3 NC_003521.1 + 134521 0.66 0.970808
Target:  5'- -aUGCGCAcggccgccgccugguUGCUGUUgcccuccaCGGCGAUGcGCa -3'
miRNA:   3'- acAUGCGU---------------ACGACAG--------GCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 155653 0.66 0.972449
Target:  5'- --aGCGcCGUGCUGggUGGCGGCGgagGUc -3'
miRNA:   3'- acaUGC-GUACGACagGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 90901 0.66 0.975035
Target:  5'- -cUGCGCAUGCg--UCGGCGuCgGUGUu -3'
miRNA:   3'- acAUGCGUACGacaGGCCGCuG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 111171 0.66 0.969676
Target:  5'- --aGCGCG-GCcGccCCGGCGACG-GCg -3'
miRNA:   3'- acaUGCGUaCGaCa-GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 59850 0.67 0.940109
Target:  5'- --cACGCAcuauggGCcgGUCaaCGGCGAUGUGCc -3'
miRNA:   3'- acaUGCGUa-----CGa-CAG--GCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 200529 0.67 0.952408
Target:  5'- gUGUGCGUccaccgGUCUGGCGuccccagGCGUGCa -3'
miRNA:   3'- -ACAUGCGuacga-CAGGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 146176 0.67 0.9528
Target:  5'- gGgcCGCGaguUGCUGgCCGGCgGACG-GCc -3'
miRNA:   3'- aCauGCGU---ACGACaGGCCG-CUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 138854 0.67 0.9528
Target:  5'- cGUAC--AUGgUGUCCGGCGAgaUGCc -3'
miRNA:   3'- aCAUGcgUACgACAGGCCGCUgcACG- -5'
13967 5' -55.3 NC_003521.1 + 240787 0.67 0.952408
Target:  5'- gUGUGCGUccaccgGUCUGGCGuccccagGCGUGCa -3'
miRNA:   3'- -ACAUGCGuacga-CAGGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 42296 0.67 0.94879
Target:  5'- gGUAgcagcUGCGUGgUG-CCGGCGGCGUc- -3'
miRNA:   3'- aCAU-----GCGUACgACaGGCCGCUGCAcg -5'
13967 5' -55.3 NC_003521.1 + 85586 0.67 0.944561
Target:  5'- gGgcCGCGggccaagGCUGgagcgaCGGCGACGUGg -3'
miRNA:   3'- aCauGCGUa------CGACag----GCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 163815 0.67 0.960172
Target:  5'- ---cCGCAUGCUGcccCUGGaCGGCG-GCg -3'
miRNA:   3'- acauGCGUACGACa--GGCC-GCUGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.