Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13967 | 5' | -55.3 | NC_003521.1 | + | 59714 | 0.66 | 0.974532 |
Target: 5'- uUGU-CGUAgaccucgagcucGCUG-CCGGCGGCG-GCg -3' miRNA: 3'- -ACAuGCGUa-----------CGACaGGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 137960 | 0.66 | 0.963543 |
Target: 5'- --aGCGCGUGUgguaugCCGaCGugGUGCg -3' miRNA: 3'- acaUGCGUACGaca---GGCcGCugCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 116375 | 0.66 | 0.966709 |
Target: 5'- --aGCuGC-UGCUG-CCGcGCGACGUGg -3' miRNA: 3'- acaUG-CGuACGACaGGC-CGCUGCACg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 91430 | 0.66 | 0.966709 |
Target: 5'- cGUGCGCAUGCgc-CUGGgGGCuuucuaUGCg -3' miRNA: 3'- aCAUGCGUACGacaGGCCgCUGc-----ACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 151792 | 0.66 | 0.966709 |
Target: 5'- gGUACaGCAUGaaGguggCCGGC-ACGUGUu -3' miRNA: 3'- aCAUG-CGUACgaCa---GGCCGcUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 105887 | 0.66 | 0.966709 |
Target: 5'- --gGCGCAga-UG-CCGGgGGCGUGUa -3' miRNA: 3'- acaUGCGUacgACaGGCCgCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 61785 | 0.66 | 0.966709 |
Target: 5'- ---cCGCcgGC--UCCGGCGugGaUGCg -3' miRNA: 3'- acauGCGuaCGacAGGCCGCugC-ACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 134521 | 0.66 | 0.970808 |
Target: 5'- -aUGCGCAcggccgccgccugguUGCUGUUgcccuccaCGGCGAUGcGCa -3' miRNA: 3'- acAUGCGU---------------ACGACAG--------GCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 155653 | 0.66 | 0.972449 |
Target: 5'- --aGCGcCGUGCUGggUGGCGGCGgagGUc -3' miRNA: 3'- acaUGC-GUACGACagGCCGCUGCa--CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 90901 | 0.66 | 0.975035 |
Target: 5'- -cUGCGCAUGCg--UCGGCGuCgGUGUu -3' miRNA: 3'- acAUGCGUACGacaGGCCGCuG-CACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 111171 | 0.66 | 0.969676 |
Target: 5'- --aGCGCG-GCcGccCCGGCGACG-GCg -3' miRNA: 3'- acaUGCGUaCGaCa-GGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 213116 | 0.66 | 0.969676 |
Target: 5'- --gACGCGcUGg-GUgUGGCGugGUGCg -3' miRNA: 3'- acaUGCGU-ACgaCAgGCCGCugCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 240063 | 0.67 | 0.940109 |
Target: 5'- --gGCGCcUGCUuggccUCCGGCGugGgGCu -3' miRNA: 3'- acaUGCGuACGAc----AGGCCGCugCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 59850 | 0.67 | 0.940109 |
Target: 5'- --cACGCAcuauggGCcgGUCaaCGGCGAUGUGCc -3' miRNA: 3'- acaUGCGUa-----CGa-CAG--GCCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 240787 | 0.67 | 0.952408 |
Target: 5'- gUGUGCGUccaccgGUCUGGCGuccccagGCGUGCa -3' miRNA: 3'- -ACAUGCGuacga-CAGGCCGC-------UGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 42296 | 0.67 | 0.94879 |
Target: 5'- gGUAgcagcUGCGUGgUG-CCGGCGGCGUc- -3' miRNA: 3'- aCAU-----GCGUACgACaGGCCGCUGCAcg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 85586 | 0.67 | 0.944561 |
Target: 5'- gGgcCGCGggccaagGCUGgagcgaCGGCGACGUGg -3' miRNA: 3'- aCauGCGUa------CGACag----GCCGCUGCACg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 163815 | 0.67 | 0.960172 |
Target: 5'- ---cCGCAUGCUGcccCUGGaCGGCG-GCg -3' miRNA: 3'- acauGCGUACGACa--GGCC-GCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 73179 | 0.67 | 0.960172 |
Target: 5'- cUGgACGCGgaGCUGgCCGGCaucGACGUGa -3' miRNA: 3'- -ACaUGCGUa-CGACaGGCCG---CUGCACg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 146176 | 0.67 | 0.9528 |
Target: 5'- gGgcCGCGaguUGCUGgCCGGCgGACG-GCc -3' miRNA: 3'- aCauGCGU---ACGACaGGCCG-CUGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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