miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 55178 0.66 0.975035
Target:  5'- --gGCGCGgacGCUGaaacacgaCCGGCGAUG-GCa -3'
miRNA:   3'- acaUGCGUa--CGACa-------GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 155653 0.66 0.972449
Target:  5'- --aGCGcCGUGCUGggUGGCGGCGgagGUc -3'
miRNA:   3'- acaUGC-GUACGACagGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 134521 0.66 0.970808
Target:  5'- -aUGCGCAcggccgccgccugguUGCUGUUgcccuccaCGGCGAUGcGCa -3'
miRNA:   3'- acAUGCGU---------------ACGACAG--------GCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 90954 0.66 0.977439
Target:  5'- -cUGCGCAUGCgauuuuugUCGGCGugGUu- -3'
miRNA:   3'- acAUGCGUACGaca-----GGCCGCugCAcg -5'
13967 5' -55.3 NC_003521.1 + 111171 0.66 0.969676
Target:  5'- --aGCGCG-GCcGccCCGGCGACG-GCg -3'
miRNA:   3'- acaUGCGUaCGaCa-GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 61785 0.66 0.966709
Target:  5'- ---cCGCcgGC--UCCGGCGugGaUGCg -3'
miRNA:   3'- acauGCGuaCGacAGGCCGCugC-ACG- -5'
13967 5' -55.3 NC_003521.1 + 105887 0.66 0.966709
Target:  5'- --gGCGCAga-UG-CCGGgGGCGUGUa -3'
miRNA:   3'- acaUGCGUacgACaGGCCgCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 90901 0.66 0.975035
Target:  5'- -cUGCGCAUGCg--UCGGCGuCgGUGUu -3'
miRNA:   3'- acAUGCGUACGacaGGCCGCuG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 29013 0.66 0.977439
Target:  5'- cGgugGCGCGgcccGCgcgcGUCUGGUugucGGCGUGCg -3'
miRNA:   3'- aCa--UGCGUa---CGa---CAGGCCG----CUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 213116 0.66 0.969676
Target:  5'- --gACGCGcUGg-GUgUGGCGugGUGCg -3'
miRNA:   3'- acaUGCGU-ACgaCAgGCCGCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 18701 0.66 0.969676
Target:  5'- aUGgccgGCGCGauccgGCUGUggcugccgCUGGCGGCG-GCg -3'
miRNA:   3'- -ACa---UGCGUa----CGACA--------GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 33260 0.66 0.966709
Target:  5'- --cGCGCA-GCaGgCCGGCGcgauCGUGCa -3'
miRNA:   3'- acaUGCGUaCGaCaGGCCGCu---GCACG- -5'
13967 5' -55.3 NC_003521.1 + 91430 0.66 0.966709
Target:  5'- cGUGCGCAUGCgc-CUGGgGGCuuucuaUGCg -3'
miRNA:   3'- aCAUGCGUACGacaGGCCgCUGc-----ACG- -5'
13967 5' -55.3 NC_003521.1 + 152902 0.66 0.977439
Target:  5'- cGUgcACGCgGUGCUcccagGUCUGGUucaGCGUGCg -3'
miRNA:   3'- aCA--UGCG-UACGA-----CAGGCCGc--UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 36840 0.66 0.977439
Target:  5'- --gGCGC-UGCUGUgCCGGguagagcaccUGACGUGg -3'
miRNA:   3'- acaUGCGuACGACA-GGCC----------GCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 151792 0.66 0.966709
Target:  5'- gGUACaGCAUGaaGguggCCGGC-ACGUGUu -3'
miRNA:   3'- aCAUG-CGUACgaCa---GGCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 32567 0.66 0.963543
Target:  5'- cGUGCGCcgcaGCUGUCUGGCccauuCG-GCc -3'
miRNA:   3'- aCAUGCGua--CGACAGGCCGcu---GCaCG- -5'
13967 5' -55.3 NC_003521.1 + 137960 0.66 0.963543
Target:  5'- --aGCGCGUGUgguaugCCGaCGugGUGCg -3'
miRNA:   3'- acaUGCGUACGaca---GGCcGCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 116375 0.66 0.966709
Target:  5'- --aGCuGC-UGCUG-CCGcGCGACGUGg -3'
miRNA:   3'- acaUG-CGuACGACaGGC-CGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 240119 0.66 0.969676
Target:  5'- gGUGgGCGUGCggucGUcCCGGCGggcGCGgaaaGCg -3'
miRNA:   3'- aCAUgCGUACGa---CA-GGCCGC---UGCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.