Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13967 | 5' | -55.3 | NC_003521.1 | + | 31639 | 1.13 | 0.003326 |
Target: 5'- gUGUACGCAUGCUGUCCGGCGACGUGCa -3' miRNA: 3'- -ACAUGCGUACGACAGGCCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 194919 | 0.77 | 0.488647 |
Target: 5'- uUGUGCGCAUGCUGgugCuCGGCGuCGUc- -3' miRNA: 3'- -ACAUGCGUACGACa--G-GCCGCuGCAcg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 89110 | 0.77 | 0.516849 |
Target: 5'- --cACGCccGUGCUGUgcuacgaCGGCGGCGUGCu -3' miRNA: 3'- acaUGCG--UACGACAg------GCCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 150651 | 0.76 | 0.536008 |
Target: 5'- cGUGCGCGacgaaggcgGCUcUCCGGCGGCG-GCg -3' miRNA: 3'- aCAUGCGUa--------CGAcAGGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 138021 | 0.76 | 0.555408 |
Target: 5'- gGUGCGCGUGCgucgcugCCGGCGcACGggGCu -3' miRNA: 3'- aCAUGCGUACGaca----GGCCGC-UGCa-CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 151433 | 0.75 | 0.594763 |
Target: 5'- cGUGCGCGUGCguaccGUgCGGCGACagGUGa -3' miRNA: 3'- aCAUGCGUACGa----CAgGCCGCUG--CACg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 56346 | 0.75 | 0.614621 |
Target: 5'- -cUGCGCGUGCUGcgcgagCUGGUGACGgagGCc -3' miRNA: 3'- acAUGCGUACGACa-----GGCCGCUGCa--CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 82912 | 0.75 | 0.624572 |
Target: 5'- -cUGCGUuagcuUGCUGcggacgcccuccUCCGGCGGCGUGUa -3' miRNA: 3'- acAUGCGu----ACGAC------------AGGCCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 148385 | 0.73 | 0.713469 |
Target: 5'- gGUGCGCGUGUUGaCgCGGuCcACGUGCg -3' miRNA: 3'- aCAUGCGUACGACaG-GCC-GcUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 123897 | 0.73 | 0.693963 |
Target: 5'- cUGU-CGCGUGCUGU-CGGCGcGCG-GCg -3' miRNA: 3'- -ACAuGCGUACGACAgGCCGC-UGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 126993 | 0.72 | 0.760939 |
Target: 5'- cUGUACaacgGC-UGCUGUgCGGUGACG-GCg -3' miRNA: 3'- -ACAUG----CGuACGACAgGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 65347 | 0.72 | 0.770143 |
Target: 5'- aGUGCauGCAggacgUGCUGUCCGGggaGACG-GCg -3' miRNA: 3'- aCAUG--CGU-----ACGACAGGCCg--CUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 126040 | 0.72 | 0.770143 |
Target: 5'- --cAgGCcgGCUGcCUGaGCGACGUGCu -3' miRNA: 3'- acaUgCGuaCGACaGGC-CGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 111996 | 0.72 | 0.760939 |
Target: 5'- cGUACuGCAgGCUG-UgGGUGGCGUGCc -3' miRNA: 3'- aCAUG-CGUaCGACaGgCCGCUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 108942 | 0.72 | 0.760939 |
Target: 5'- aGUGCGCG-GCUGU-CGGUGGCGUc- -3' miRNA: 3'- aCAUGCGUaCGACAgGCCGCUGCAcg -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 129987 | 0.71 | 0.814252 |
Target: 5'- cGU-CGCugccGCUGcgCCGGCGGCG-GCg -3' miRNA: 3'- aCAuGCGua--CGACa-GGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 149618 | 0.71 | 0.814252 |
Target: 5'- -aUGCGCGaaacggcGCUGgacgccgCCGGCGAgGUGCu -3' miRNA: 3'- acAUGCGUa------CGACa------GGCCGCUgCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 137483 | 0.71 | 0.820137 |
Target: 5'- --gGCGCcgGCgUGUCgCGGCGccgcgaggucugggACGUGCa -3' miRNA: 3'- acaUGCGuaCG-ACAG-GCCGC--------------UGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 65855 | 0.71 | 0.788193 |
Target: 5'- cUGU-UGCAgcuguUGCUGUCCcuGGCGguaGCGUGCg -3' miRNA: 3'- -ACAuGCGU-----ACGACAGG--CCGC---UGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 150559 | 0.71 | 0.814252 |
Target: 5'- gGUGCGgGUGgUGg-CGGCGGCGgcgGCg -3' miRNA: 3'- aCAUGCgUACgACagGCCGCUGCa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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