miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 43891 0.69 0.883245
Target:  5'- --cACGCuaccgGUGCUG-CCGGUGACGacGCg -3'
miRNA:   3'- acaUGCG-----UACGACaGGCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 201849 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 138453 0.7 0.845995
Target:  5'- --cGCGCGUGCaucgCCGGCGGCGccacaucUGCc -3'
miRNA:   3'- acaUGCGUACGaca-GGCCGCUGC-------ACG- -5'
13967 5' -55.3 NC_003521.1 + 115363 0.7 0.846774
Target:  5'- gGUcACGCGUcGCUGgccagggCCGGC-AUGUGCa -3'
miRNA:   3'- aCA-UGCGUA-CGACa------GGCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 116089 0.7 0.846774
Target:  5'- aGUGCaGCG-GCUGUCCGcGCGACa--- -3'
miRNA:   3'- aCAUG-CGUaCGACAGGC-CGCUGcacg -5'
13967 5' -55.3 NC_003521.1 + 160773 0.7 0.846774
Target:  5'- --cGCGCGUGCcG-CCGGCGGCacGCg -3'
miRNA:   3'- acaUGCGUACGaCaGGCCGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 118743 0.7 0.85446
Target:  5'- gGgcUGCAgguUGCUGgugagUCGGCGGcCGUGCg -3'
miRNA:   3'- aCauGCGU---ACGACa----GGCCGCU-GCACG- -5'
13967 5' -55.3 NC_003521.1 + 223837 0.7 0.869255
Target:  5'- --gGCGCcUGCUGUCCcuGCGGC-UGCu -3'
miRNA:   3'- acaUGCGuACGACAGGc-CGCUGcACG- -5'
13967 5' -55.3 NC_003521.1 + 31717 0.69 0.876353
Target:  5'- aUGUGCGCGUGCUGggacgCC-GCGGCcaccGCc -3'
miRNA:   3'- -ACAUGCGUACGACa----GGcCGCUGca--CG- -5'
13967 5' -55.3 NC_003521.1 + 137483 0.71 0.820137
Target:  5'- --gGCGCcgGCgUGUCgCGGCGccgcgaggucugggACGUGCa -3'
miRNA:   3'- acaUGCGuaCG-ACAG-GCCGC--------------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 149618 0.71 0.814252
Target:  5'- -aUGCGCGaaacggcGCUGgacgccgCCGGCGAgGUGCu -3'
miRNA:   3'- acAUGCGUa------CGACa------GGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 129987 0.71 0.814252
Target:  5'- cGU-CGCugccGCUGcgCCGGCGGCG-GCg -3'
miRNA:   3'- aCAuGCGua--CGACa-GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 150651 0.76 0.536008
Target:  5'- cGUGCGCGacgaaggcgGCUcUCCGGCGGCG-GCg -3'
miRNA:   3'- aCAUGCGUa--------CGAcAGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 138021 0.76 0.555408
Target:  5'- gGUGCGCGUGCgucgcugCCGGCGcACGggGCu -3'
miRNA:   3'- aCAUGCGUACGaca----GGCCGC-UGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 151433 0.75 0.594763
Target:  5'- cGUGCGCGUGCguaccGUgCGGCGACagGUGa -3'
miRNA:   3'- aCAUGCGUACGa----CAgGCCGCUG--CACg -5'
13967 5' -55.3 NC_003521.1 + 123897 0.73 0.693963
Target:  5'- cUGU-CGCGUGCUGU-CGGCGcGCG-GCg -3'
miRNA:   3'- -ACAuGCGUACGACAgGCCGC-UGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 148385 0.73 0.713469
Target:  5'- gGUGCGCGUGUUGaCgCGGuCcACGUGCg -3'
miRNA:   3'- aCAUGCGUACGACaG-GCC-GcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 108942 0.72 0.760939
Target:  5'- aGUGCGCG-GCUGU-CGGUGGCGUc- -3'
miRNA:   3'- aCAUGCGUaCGACAgGCCGCUGCAcg -5'
13967 5' -55.3 NC_003521.1 + 65347 0.72 0.770143
Target:  5'- aGUGCauGCAggacgUGCUGUCCGGggaGACG-GCg -3'
miRNA:   3'- aCAUG--CGU-----ACGACAGGCCg--CUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 150559 0.71 0.814252
Target:  5'- gGUGCGgGUGgUGg-CGGCGGCGgcgGCg -3'
miRNA:   3'- aCAUGCgUACgACagGCCGCUGCa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.