miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 31639 1.13 0.003326
Target:  5'- gUGUACGCAUGCUGUCCGGCGACGUGCa -3'
miRNA:   3'- -ACAUGCGUACGACAGGCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 135740 0.7 0.838903
Target:  5'- aUGUGCGCGccacUGC-GUCCGcGuCGACGggggGCg -3'
miRNA:   3'- -ACAUGCGU----ACGaCAGGC-C-GCUGCa---CG- -5'
13967 5' -55.3 NC_003521.1 + 191256 0.7 0.846774
Target:  5'- aGUGCGcCGUGCagacggccGUCCaGGUGGCgGUGCa -3'
miRNA:   3'- aCAUGC-GUACGa-------CAGG-CCGCUG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 29013 0.66 0.977439
Target:  5'- cGgugGCGCGgcccGCgcgcGUCUGGUugucGGCGUGCg -3'
miRNA:   3'- aCa--UGCGUa---CGa---CAGGCCG----CUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 126993 0.72 0.760939
Target:  5'- cUGUACaacgGC-UGCUGUgCGGUGACG-GCg -3'
miRNA:   3'- -ACAUG----CGuACGACAgGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 111996 0.72 0.760939
Target:  5'- cGUACuGCAgGCUG-UgGGUGGCGUGCc -3'
miRNA:   3'- aCAUG-CGUaCGACaGgCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 65855 0.71 0.788193
Target:  5'- cUGU-UGCAgcuguUGCUGUCCcuGGCGguaGCGUGCg -3'
miRNA:   3'- -ACAuGCGU-----ACGACAGG--CCGC---UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 63897 0.71 0.788193
Target:  5'- -uUGCGCGUGCgguacuucUCCaGGCGGCGcUGCa -3'
miRNA:   3'- acAUGCGUACGac------AGG-CCGCUGC-ACG- -5'
13967 5' -55.3 NC_003521.1 + 190629 0.71 0.820137
Target:  5'- --gACGUcggaggagacggagAUGCUGcCCGGCG-CGUGCc -3'
miRNA:   3'- acaUGCG--------------UACGACaGGCCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 155496 0.7 0.838903
Target:  5'- gGgcCGCAcgaaGCgGUCCacguaGGCGACGUGCu -3'
miRNA:   3'- aCauGCGUa---CGaCAGG-----CCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 133645 0.71 0.822635
Target:  5'- --aGCGCGgaccgccgcGCUGUgCCGGCGGacCGUGCu -3'
miRNA:   3'- acaUGCGUa--------CGACA-GGCCGCU--GCACG- -5'
13967 5' -55.3 NC_003521.1 + 165925 0.71 0.805712
Target:  5'- cUGgACGCAUGgUG-CCaGcGCGGCGUGCu -3'
miRNA:   3'- -ACaUGCGUACgACaGG-C-CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 89110 0.77 0.516849
Target:  5'- --cACGCccGUGCUGUgcuacgaCGGCGGCGUGCu -3'
miRNA:   3'- acaUGCG--UACGACAg------GCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 105862 0.71 0.830855
Target:  5'- --aGCGCcugagcgGCUGcgCCGGCGGCG-GCg -3'
miRNA:   3'- acaUGCGua-----CGACa-GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 56346 0.75 0.614621
Target:  5'- -cUGCGCGUGCUGcgcgagCUGGUGACGgagGCc -3'
miRNA:   3'- acAUGCGUACGACa-----GGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 97049 0.71 0.797023
Target:  5'- cGUaGCGCcgccgcUGCUG-CCGGCGGCGacgGCg -3'
miRNA:   3'- aCA-UGCGu-----ACGACaGGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 239466 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 85940 0.7 0.846774
Target:  5'- --gGCGCGUGCUGgacgCCGGCucggaacagcuGGCGgccGCg -3'
miRNA:   3'- acaUGCGUACGACa---GGCCG-----------CUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 82912 0.75 0.624572
Target:  5'- -cUGCGUuagcuUGCUGcggacgcccuccUCCGGCGGCGUGUa -3'
miRNA:   3'- acAUGCGu----ACGAC------------AGGCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 126040 0.72 0.770143
Target:  5'- --cAgGCcgGCUGcCUGaGCGACGUGCu -3'
miRNA:   3'- acaUgCGuaCGACaGGC-CGCUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.