miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 31639 1.13 0.003326
Target:  5'- gUGUACGCAUGCUGUCCGGCGACGUGCa -3'
miRNA:   3'- -ACAUGCGUACGACAGGCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 153366 0.69 0.90264
Target:  5'- cGU-CGCGcGCgc-CCGGCGGCGUGg -3'
miRNA:   3'- aCAuGCGUaCGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 224679 0.69 0.896391
Target:  5'- --cACGCAgcgcCUGgCCGGCGAgGUGUa -3'
miRNA:   3'- acaUGCGUac--GACaGGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 207175 0.7 0.849871
Target:  5'- gGUcaACGCggugaucuucacaugGUGCUG-CUGuGCGGCGUGCg -3'
miRNA:   3'- aCA--UGCG---------------UACGACaGGC-CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 233484 0.71 0.822635
Target:  5'- --gACGCAaGCUGUaCGGUGGCG-GCg -3'
miRNA:   3'- acaUGCGUaCGACAgGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 53954 0.68 0.920051
Target:  5'- cGUAC-CGUGUauaacuaacaUGcCCGGCGGCG-GCa -3'
miRNA:   3'- aCAUGcGUACG----------ACaGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 154735 0.69 0.908074
Target:  5'- --gGCGCcgGCgGUgCCGGUGaccaacaGCGUGCg -3'
miRNA:   3'- acaUGCGuaCGaCA-GGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 63897 0.71 0.788193
Target:  5'- -uUGCGCGUGCgguacuucUCCaGGCGGCGcUGCa -3'
miRNA:   3'- acAUGCGUACGac------AGG-CCGCUGC-ACG- -5'
13967 5' -55.3 NC_003521.1 + 76604 0.7 0.872119
Target:  5'- gGUGCGCAagacggccUGCgaGUUCGucaagggcgugacgcGCGACGUGCu -3'
miRNA:   3'- aCAUGCGU--------ACGa-CAGGC---------------CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 103576 0.7 0.869255
Target:  5'- cGUcaGCGCcUGCUGgaguaCCGGCG-CGUGg -3'
miRNA:   3'- aCA--UGCGuACGACa----GGCCGCuGCACg -5'
13967 5' -55.3 NC_003521.1 + 126040 0.72 0.770143
Target:  5'- --cAgGCcgGCUGcCUGaGCGACGUGCu -3'
miRNA:   3'- acaUgCGuaCGACaGGC-CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 111996 0.72 0.760939
Target:  5'- cGUACuGCAgGCUG-UgGGUGGCGUGCc -3'
miRNA:   3'- aCAUG-CGUaCGACaGgCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 118029 0.68 0.930532
Target:  5'- --cAUGC-UGCUGggaCGGCGGCG-GCg -3'
miRNA:   3'- acaUGCGuACGACag-GCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 216606 0.68 0.925404
Target:  5'- --aGCGCGUGCUGgaucuaCUGGCGcuACGaGCg -3'
miRNA:   3'- acaUGCGUACGACa-----GGCCGC--UGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 187579 0.69 0.889925
Target:  5'- gGUGCGC-UGUUGUCCGacGCGGCc-GCu -3'
miRNA:   3'- aCAUGCGuACGACAGGC--CGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 239466 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 133645 0.71 0.822635
Target:  5'- --aGCGCGgaccgccgcGCUGUgCCGGCGGacCGUGCu -3'
miRNA:   3'- acaUGCGUa--------CGACA-GGCCGCU--GCACG- -5'
13967 5' -55.3 NC_003521.1 + 126993 0.72 0.760939
Target:  5'- cUGUACaacgGC-UGCUGUgCGGUGACG-GCg -3'
miRNA:   3'- -ACAUG----CGuACGACAgGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 220334 0.7 0.868534
Target:  5'- gUGUACGCgcugcugGUGCUGUCCuuccuGGCGuuG-GCg -3'
miRNA:   3'- -ACAUGCG-------UACGACAGG-----CCGCugCaCG- -5'
13967 5' -55.3 NC_003521.1 + 66046 0.69 0.876353
Target:  5'- cGgcCGaa-GUUGUCCGGCGGCGgUGUg -3'
miRNA:   3'- aCauGCguaCGACAGGCCGCUGC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.