miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 17363 0.69 0.876353
Target:  5'- gGUACGacgGCggGUCCGGUGGCGg-- -3'
miRNA:   3'- aCAUGCguaCGa-CAGGCCGCUGCacg -5'
13967 5' -55.3 NC_003521.1 + 18701 0.66 0.969676
Target:  5'- aUGgccgGCGCGauccgGCUGUggcugccgCUGGCGGCG-GCg -3'
miRNA:   3'- -ACa---UGCGUa----CGACA--------GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 29013 0.66 0.977439
Target:  5'- cGgugGCGCGgcccGCgcgcGUCUGGUugucGGCGUGCg -3'
miRNA:   3'- aCa--UGCGUa---CGa---CAGGCCG----CUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 31639 1.13 0.003326
Target:  5'- gUGUACGCAUGCUGUCCGGCGACGUGCa -3'
miRNA:   3'- -ACAUGCGUACGACAGGCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 31717 0.69 0.876353
Target:  5'- aUGUGCGCGUGCUGggacgCC-GCGGCcaccGCc -3'
miRNA:   3'- -ACAUGCGUACGACa----GGcCGCUGca--CG- -5'
13967 5' -55.3 NC_003521.1 + 32097 0.68 0.920051
Target:  5'- --aGCGcCAUGC-GUuuGGCGGCGcgGCu -3'
miRNA:   3'- acaUGC-GUACGaCAggCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 32567 0.66 0.963543
Target:  5'- cGUGCGCcgcaGCUGUCUGGCccauuCG-GCc -3'
miRNA:   3'- aCAUGCGua--CGACAGGCCGcu---GCaCG- -5'
13967 5' -55.3 NC_003521.1 + 33260 0.66 0.966709
Target:  5'- --cGCGCA-GCaGgCCGGCGcgauCGUGCa -3'
miRNA:   3'- acaUGCGUaCGaCaGGCCGCu---GCACG- -5'
13967 5' -55.3 NC_003521.1 + 36840 0.66 0.977439
Target:  5'- --gGCGC-UGCUGUgCCGGguagagcaccUGACGUGg -3'
miRNA:   3'- acaUGCGuACGACA-GGCC----------GCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 42296 0.67 0.94879
Target:  5'- gGUAgcagcUGCGUGgUG-CCGGCGGCGUc- -3'
miRNA:   3'- aCAU-----GCGUACgACaGGCCGCUGCAcg -5'
13967 5' -55.3 NC_003521.1 + 42558 0.69 0.896391
Target:  5'- --gACGCccggcugGCUGUCCGGCGGCc--- -3'
miRNA:   3'- acaUGCGua-----CGACAGGCCGCUGcacg -5'
13967 5' -55.3 NC_003521.1 + 43819 0.66 0.969676
Target:  5'- --gACGCG-GCg--CCGGCGGCGgggaGCg -3'
miRNA:   3'- acaUGCGUaCGacaGGCCGCUGCa---CG- -5'
13967 5' -55.3 NC_003521.1 + 43891 0.69 0.883245
Target:  5'- --cACGCuaccgGUGCUG-CCGGUGACGacGCg -3'
miRNA:   3'- acaUGCG-----UACGACaGGCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 44248 0.69 0.906882
Target:  5'- cGUGCGCG-GgaGUCCGGCgucacgccggaggaGaucaGCGUGCa -3'
miRNA:   3'- aCAUGCGUaCgaCAGGCCG--------------C----UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 45787 0.68 0.935433
Target:  5'- --gGCGCccGCUccaaGUCCaugcggcucgacGGCGACGUGUa -3'
miRNA:   3'- acaUGCGuaCGA----CAGG------------CCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 45913 0.69 0.911015
Target:  5'- gUGUGCGCcgGaccccgcggagCCGGCGGCGgugGCc -3'
miRNA:   3'- -ACAUGCGuaCgaca-------GGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 49111 0.69 0.908667
Target:  5'- aGUGCGCGUGgUGaCCG-CGGCGccgcUGCu -3'
miRNA:   3'- aCAUGCGUACgACaGGCcGCUGC----ACG- -5'
13967 5' -55.3 NC_003521.1 + 49889 0.69 0.889925
Target:  5'- cGUG-GCGUGC-GUgUGGCGACG-GCa -3'
miRNA:   3'- aCAUgCGUACGaCAgGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 53954 0.68 0.920051
Target:  5'- cGUAC-CGUGUauaacuaacaUGcCCGGCGGCG-GCa -3'
miRNA:   3'- aCAUGcGUACG----------ACaGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 55178 0.66 0.975035
Target:  5'- --gGCGCGgacGCUGaaacacgaCCGGCGAUG-GCa -3'
miRNA:   3'- acaUGCGUa--CGACa-------GGCCGCUGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.